Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   A6M06_RS08640 Genome accession   NZ_CP016651
Coordinates   1662588..1663586 (+) Length   332 a.a.
NCBI ID   WP_002221268.1    Uniprot ID   A0AAD2J6P7
Organism   Neisseria meningitidis strain M25474     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 1657588..1668586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M06_RS08610 (A6M06_08610) - 1657805..1658515 (-) 711 WP_002221263.1 uracil-DNA glycosylase family protein -
  A6M06_RS08615 (A6M06_08615) rsmA 1658712..1659491 (+) 780 WP_002221264.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  A6M06_RS08620 (A6M06_08620) - 1659664..1660392 (+) 729 WP_002217681.1 amino acid ABC transporter ATP-binding protein -
  A6M06_RS08625 (A6M06_08625) - 1660465..1660824 (+) 360 WP_002221265.1 hypothetical protein -
  A6M06_RS08630 (A6M06_08630) - 1660829..1661269 (+) 441 WP_002221266.1 protein YgfX -
  A6M06_RS08635 (A6M06_08635) folC 1661301..1662575 (+) 1275 WP_002221267.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  A6M06_RS08640 (A6M06_08640) tpc 1662588..1663586 (+) 999 WP_002221268.1 cell division protein FtsN Machinery gene
  A6M06_RS08645 (A6M06_08645) - 1663579..1664076 (+) 498 WP_002214153.1 CvpA family protein -
  A6M06_RS13635 - 1664073..1664243 (+) 171 WP_153308407.1 hypothetical protein -
  A6M06_RS08650 (A6M06_08650) purF 1664388..1665932 (+) 1545 WP_002221269.1 amidophosphoribosyltransferase -
  A6M06_RS08655 (A6M06_08655) greB 1666032..1666523 (+) 492 WP_002214159.1 transcription elongation factor GreB -
  A6M06_RS08660 (A6M06_08660) - 1666582..1667208 (+) 627 WP_002221271.1 phosphoribosylanthranilate isomerase -

Sequence


Protein


Download         Length: 332 a.a.        Molecular weight: 35577.94 Da        Isoelectric Point: 10.1759

>NTDB_id=190284 A6M06_RS08640 WP_002221268.1 1662588..1663586(+) (tpc) [Neisseria meningitidis strain M25474]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAEQTAGETNGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKETKKADKAESKKTAEKDRSDGKKHETA
QKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKL
RVHGIAGQVTNE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=190284 A6M06_RS08640 WP_002221268.1 1662588..1663586(+) (tpc) [Neisseria meningitidis strain M25474]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCGAACAGACTGCCGGCGAAA
CAAACGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGACCGCCTCGAAGACAGCAACATCAAAGGTTTGGAAGCATCCGAGAAACTGCAACAGGCAGAAACCGCCAAAACCGCAC
CGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCG
AAACGCACTGCCGAAACAAAACCGCAAAAAGCGGAACGCACTGCCAAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGC
CGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAG
AAACGAAAAAAGCCGACAAGGCTGAAAGCAAAAAAACAGCCGAAAAAGACCGTTCGGACGGCAAAAAACACGAAACGGCA
CAAAAAACCGACAAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTA
TGCCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAAGCGGCGGGTATCGATTCGACCATCACCGAAATTATGA
CCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTG
CGCGTACACGGTATCGCCGGTCAGGTAACGAATGAATAA

Domains


Predicted by InterproScan.

(259-330)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

89.595

100

0.934


Multiple sequence alignment