Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6L30_RS05065 Genome accession   NZ_CP016649
Coordinates   994503..994967 (-) Length   154 a.a.
NCBI ID   WP_025463168.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22189     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 991903..1005017 994503..994967 within 0
IS/Tn 992974..993627 994503..994967 flank 876


Gene organization within MGE regions


Location: 991903..1005017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L30_RS05045 (A6L30_05045) - 992361..992618 (+) 258 WP_065821470.1 hypothetical protein -
  A6L30_RS05050 (A6L30_05050) - 992600..992809 (-) 210 Protein_923 transposase -
  A6L30_RS05055 (A6L30_05055) - 992974..993627 (-) 654 WP_002241060.1 IS1595 family transposase -
  A6L30_RS12085 - 994185..994391 (-) 207 WP_025461473.1 hypothetical protein -
  A6L30_RS05065 (A6L30_05065) comE 994503..994967 (-) 465 WP_025463168.1 ComEA family DNA-binding protein Machinery gene
  A6L30_RS05100 (A6L30_05100) - 1000765..1001571 (-) 807 WP_002221447.1 cytochrome C assembly family protein -
  A6L30_RS05105 (A6L30_05105) ffh 1001791..1003161 (+) 1371 WP_002221448.1 signal recognition particle protein -
  A6L30_RS05110 (A6L30_05110) dsbA2 1003492..1004187 (-) 696 WP_002215704.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  A6L30_RS05115 (A6L30_05115) - 1004358..1005017 (-) 660 WP_002218694.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16561.83 Da        Isoelectric Point: 10.9695

>NTDB_id=190168 A6L30_RS05065 WP_025463168.1 994503..994967(-) (comE) [Neisseria meningitidis strain M22189]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPVLPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=190168 A6L30_RS05065 WP_025463168.1 994503..994967(-) (comE) [Neisseria meningitidis strain M22189]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGTGCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment