Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6L47_RS14390 Genome accession   NZ_CP016647
Coordinates   1685214..1685678 (-) Length   154 a.a.
NCBI ID   WP_164742033.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22809     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1680214..1690678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L47_RS08860 (A6L47_08860) rfbC 1681008..1681565 (+) 558 WP_002234441.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  A6L47_RS08865 (A6L47_08865) - 1681609..1683627 (-) 2019 WP_002216177.1 OPT family oligopeptide transporter -
  A6L47_RS08870 (A6L47_08870) dnaJ 1683823..1684944 (-) 1122 WP_002235332.1 molecular chaperone DnaJ -
  A6L47_RS14390 comE 1685214..1685678 (-) 465 WP_164742033.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16514.78 Da        Isoelectric Point: 10.6993

>NTDB_id=190102 A6L47_RS14390 WP_164742033.1 1685214..1685678(-) (comE) [Neisseria meningitidis strain M22809]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=190102 A6L47_RS14390 WP_164742033.1 1685214..1685678(-) (comE) [Neisseria meningitidis strain M22809]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCAGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTGAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGGCCCAGCTAAACCAGTGCTGCCCGCGGATAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment