Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6L49_RS14115 Genome accession   NZ_CP016646
Coordinates   526605..527069 (-) Length   154 a.a.
NCBI ID   WP_164742033.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22819     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 521605..532069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L49_RS02740 (A6L49_02740) rfbC 522399..522956 (+) 558 WP_002234441.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  A6L49_RS02745 (A6L49_02745) - 523000..525018 (-) 2019 WP_002216177.1 OPT family oligopeptide transporter -
  A6L49_RS02750 (A6L49_02750) dnaJ 525214..526335 (-) 1122 WP_002235332.1 molecular chaperone DnaJ -
  A6L49_RS14115 comE 526605..527069 (-) 465 WP_164742033.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16514.78 Da        Isoelectric Point: 10.6993

>NTDB_id=190052 A6L49_RS14115 WP_164742033.1 526605..527069(-) (comE) [Neisseria meningitidis strain M22819]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=190052 A6L49_RS14115 WP_164742033.1 526605..527069(-) (comE) [Neisseria meningitidis strain M22819]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCAGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTGAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGGCCCAGCTAAACCAGTGCTGCCCGCGGATAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment