Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A6L49_RS07365 Genome accession   NZ_CP016646
Coordinates   1398989..1399585 (+) Length   198 a.a.
NCBI ID   WP_002258539.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22819     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1393989..1404585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L49_RS07340 (A6L49_07340) - 1394298..1394885 (-) 588 WP_002258535.1 superoxide dismutase -
  A6L49_RS07345 (A6L49_07345) dnaB 1395048..1396454 (+) 1407 WP_002220671.1 replicative DNA helicase -
  A6L49_RS07350 (A6L49_07350) pilH 1396763..1397428 (+) 666 WP_002258536.1 GspH/FimT family pseudopilin Machinery gene
  A6L49_RS07355 (A6L49_07355) pilV 1397458..1398072 (+) 615 WP_002258537.1 type IV pilus modification protein PilV Machinery gene
  A6L49_RS07360 (A6L49_07360) pilJ 1398069..1399010 (+) 942 WP_002258538.1 PilW family protein Machinery gene
  A6L49_RS07365 (A6L49_07365) pilK 1398989..1399585 (+) 597 WP_002258539.1 pilus assembly PilX family protein Machinery gene
  A6L49_RS14655 (A6L49_07370) - 1399590..1400064 (+) 475 Protein_1371 PilX family type IV pilin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21830.74 Da        Isoelectric Point: 5.3906

>NTDB_id=190041 A6L49_RS07365 WP_002258539.1 1398989..1399585(+) (pilK) [Neisseria meningitidis strain M22819]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCAKGLCTAVNVRTNNTGNEEAFDNIVVQDNPTVEAVKRSCPANSTDLCIDKKGMKYKKGTRSVSEMPRYII
EYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=190041 A6L49_RS07365 WP_002258539.1 1398989..1399585(+) (pilK) [Neisseria meningitidis strain M22819]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTACTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGCAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATACTGGTAA
TGAAGAGGCTTTTGACAATATCGTGGTGCAAGACAATCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAATTCTA
CCGACCTGTGCATTGACAAGAAAGGGATGAAATATAAGAAAGGCACGAGAAGCGTCAGCGAAATGCCACGTTATATTATC
GAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGT
CGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

86.139

100

0.879

Multiple sequence alignment