Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   A6L49_RS05105 Genome accession   NZ_CP016646
Coordinates   979100..979699 (-) Length   199 a.a.
NCBI ID   WP_002217907.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22819     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 974100..984699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L49_RS05090 (A6L49_05090) pilQ 975609..977870 (-) 2262 WP_002258690.1 type IV pilus secretin PilQ Machinery gene
  A6L49_RS05095 (A6L49_05095) pilP 977889..978434 (-) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  A6L49_RS05100 (A6L49_05100) - 978452..979099 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  A6L49_RS05105 (A6L49_05105) pilN 979100..979699 (-) 600 WP_002217907.1 PilN domain-containing protein Machinery gene
  A6L49_RS05110 (A6L49_05110) pilM 979702..980817 (-) 1116 WP_065826102.1 type IV pilus biogenesis protein PilM -
  A6L49_RS05115 (A6L49_05115) - 980969..983365 (+) 2397 WP_065826103.1 penicillin-binding protein 1A -
  A6L49_RS05120 (A6L49_05120) yihA 983486..984115 (-) 630 WP_002227620.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22258.42 Da        Isoelectric Point: 8.3628

>NTDB_id=190029 A6L49_RS05105 WP_002217907.1 979100..979699(-) (pilN) [Neisseria meningitidis strain M22819]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINNQSERNTLLETSIAHLDTELSEIQKLKQE
KDAFLIKENKIEELQLKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=190029 A6L49_RS05105 WP_002217907.1 979100..979699(-) (pilN) [Neisseria meningitidis strain M22819]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAGCGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGTGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAACCAGT
CGGAAAGAAACACGCTGCTGGAAACCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGGAAAACAAAATCGAGGAGCTCCAGCTCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTGACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCCATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

99.497

100

0.995

Multiple sequence alignment