Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A6L28_RS08025 Genome accession   NZ_CP016645
Coordinates   1552158..1552751 (-) Length   197 a.a.
NCBI ID   WP_002248275.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M12752     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1547158..1557751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L28_RS08005 (A6L28_08005) dapC 1547335..1548522 (-) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  A6L28_RS08010 (A6L28_08010) dut 1548598..1549050 (-) 453 WP_002220679.1 dUTP diphosphatase -
  A6L28_RS08015 (A6L28_08015) - 1549193..1549621 (+) 429 Protein_1479 AzlC family ABC transporter permease -
  A6L28_RS08020 (A6L28_08020) pilX 1551680..1552153 (-) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L28_RS08025 (A6L28_08025) pilK 1552158..1552751 (-) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6L28_RS08030 (A6L28_08030) pilJ 1552730..1553668 (-) 939 WP_002248274.1 PilW family protein Machinery gene
  A6L28_RS08035 (A6L28_08035) pilV 1553665..1554276 (-) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6L28_RS08040 (A6L28_08040) pilH 1554300..1554977 (-) 678 WP_002248272.1 GspH/FimT family pseudopilin Machinery gene
  A6L28_RS08045 (A6L28_08045) dnaB 1555132..1556538 (-) 1407 WP_002248271.1 replicative DNA helicase -
  A6L28_RS08050 (A6L28_08050) - 1556701..1557288 (+) 588 WP_002220670.1 superoxide dismutase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21725.67 Da        Isoelectric Point: 6.3911

>NTDB_id=189990 A6L28_RS08025 WP_002248275.1 1552158..1552751(-) (pilK) [Neisseria meningitidis strain M12752]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=189990 A6L28_RS08025 WP_002248275.1 1552158..1552751(-) (pilK) [Neisseria meningitidis strain M12752]
ATGCGCAAACAGAACGCTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTGCTGATGGT
AATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATTCTACCG
ACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCGCGCTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

85.644

100

0.878

Multiple sequence alignment