Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   A6L28_RS08040 Genome accession   NZ_CP016645
Coordinates   1554300..1554977 (-) Length   225 a.a.
NCBI ID   WP_002248272.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M12752     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1549300..1559977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L28_RS08020 (A6L28_08020) pilX 1551680..1552153 (-) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L28_RS08025 (A6L28_08025) pilK 1552158..1552751 (-) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6L28_RS08030 (A6L28_08030) pilJ 1552730..1553668 (-) 939 WP_002248274.1 PilW family protein Machinery gene
  A6L28_RS08035 (A6L28_08035) pilV 1553665..1554276 (-) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6L28_RS08040 (A6L28_08040) pilH 1554300..1554977 (-) 678 WP_002248272.1 GspH/FimT family pseudopilin Machinery gene
  A6L28_RS08045 (A6L28_08045) dnaB 1555132..1556538 (-) 1407 WP_002248271.1 replicative DNA helicase -
  A6L28_RS08050 (A6L28_08050) - 1556701..1557288 (+) 588 WP_002220670.1 superoxide dismutase -
  A6L28_RS08055 (A6L28_08055) - 1557860..1558369 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A6L28_RS08060 (A6L28_08060) - 1558701..1559033 (-) 333 WP_002226445.1 hypothetical protein -
  A6L28_RS14755 - 1559078..1559185 (-) 108 Protein_1489 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25328.01 Da        Isoelectric Point: 10.0104

>NTDB_id=189993 A6L28_RS08040 WP_002248272.1 1554300..1554977(-) (pilH) [Neisseria meningitidis strain M12752]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTVN
NKCDSGKKGQGMLAFGDKNGNKGYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTTDRVVWTFNQNGTFGYTK
DQHLTKQSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=189993 A6L28_RS08040 WP_002248272.1 1554300..1554977(-) (pilH) [Neisseria meningitidis strain M12752]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGGTCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTTGGTCAGACTCAGCCGACCACCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTACAAAACAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCGGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

84.259

96

0.809

Multiple sequence alignment