Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   B9W17_RS08530 Genome accession   NZ_CP020933
Coordinates   1727134..1727871 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain HB-Coli0     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1722134..1732871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9W17_RS08500 (B9W17_08940) yfiL 1722292..1722657 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  B9W17_RS08505 (B9W17_08945) aroF 1722867..1723937 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  B9W17_RS08510 (B9W17_08950) tyrA 1723948..1725069 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  B9W17_RS08515 (B9W17_08955) pheA 1725112..1726272 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  B9W17_RS08520 pheL 1726371..1726418 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  B9W17_RS08525 (B9W17_08960) raiA 1726522..1726863 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  B9W17_RS08530 (B9W17_08970) comL 1727134..1727871 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  B9W17_RS08535 (B9W17_08975) rluD 1728006..1728986 (+) 981 WP_063112770.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  B9W17_RS08540 (B9W17_08980) yfiH 1728983..1729714 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  B9W17_RS08545 (B9W17_08985) clpC 1729844..1732417 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=189934 B9W17_RS08530 WP_000197686.1 1727134..1727871(-) (comL) [Escherichia coli strain HB-Coli0]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=189934 B9W17_RS08530 WP_000197686.1 1727134..1727871(-) (comL) [Escherichia coli strain HB-Coli0]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376