Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B9L64_RS18380 Genome accession   NZ_CP020915
Coordinates   3566802..3567449 (+) Length   215 a.a.
NCBI ID   WP_015252479.1    Uniprot ID   -
Organism   Bacillus subtilis strain 50-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3561802..3572449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS18365 glpD 3561976..3563643 (+) 1668 WP_021479678.1 glycerol-3-phosphate dehydrogenase -
  B9L64_RS18370 pgcA 3563773..3565518 (+) 1746 WP_088325493.1 phosphoglucomutase -
  B9L64_RS18375 yhcY 3565666..3566805 (+) 1140 WP_003245750.1 two-component system sensor histidine kinase YhcY -
  B9L64_RS18380 vraR 3566802..3567449 (+) 648 WP_015252479.1 two-component system response regulator YhcZ Regulator
  B9L64_RS18385 yhdA 3567446..3567970 (+) 525 WP_015715573.1 FMN-dependent NADPH-azoreductase -
  B9L64_RS18390 yhdB 3567985..3568227 (-) 243 WP_003233373.1 YhdB family protein -
  B9L64_RS18395 yhdC 3568428..3568751 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  B9L64_RS18400 lytF 3568793..3570259 (-) 1467 WP_088325494.1 peptidoglycan endopeptidase LytF -
  B9L64_RS18405 nsrR 3570411..3570851 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24149.78 Da        Isoelectric Point: 6.3034

>NTDB_id=189859 B9L64_RS18380 WP_015252479.1 3566802..3567449(+) (vraR) [Bacillus subtilis strain 50-1]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=189859 B9L64_RS18380 WP_015252479.1 3566802..3567449(+) (vraR) [Bacillus subtilis strain 50-1]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACTGGATTAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCAAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGACCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.395