Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A6L32_RS10620 Genome accession   NZ_CP016627
Coordinates   2056612..2057205 (-) Length   197 a.a.
NCBI ID   WP_002248275.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22718     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2051612..2062205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L32_RS10600 (A6L32_10600) dapC 2051789..2052976 (-) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  A6L32_RS10605 (A6L32_10605) dut 2053052..2053504 (-) 453 WP_002220679.1 dUTP diphosphatase -
  A6L32_RS10610 (A6L32_10610) - 2053647..2054075 (+) 429 Protein_1982 AzlC family ABC transporter permease -
  A6L32_RS10615 (A6L32_10615) pilX 2056134..2056607 (-) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L32_RS10620 (A6L32_10620) pilK 2056612..2057205 (-) 594 WP_002248275.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6L32_RS10625 (A6L32_10625) pilJ 2057184..2058122 (-) 939 WP_002248274.1 PilW family protein Machinery gene
  A6L32_RS10630 (A6L32_10630) pilV 2058119..2058730 (-) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6L32_RS10635 (A6L32_10635) pilH 2058754..2059431 (-) 678 WP_002248272.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  A6L32_RS10640 (A6L32_10640) dnaB 2059586..2060992 (-) 1407 WP_002248271.1 replicative DNA helicase -
  A6L32_RS10645 (A6L32_10645) - 2061155..2061742 (+) 588 WP_002220670.1 superoxide dismutase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21725.67 Da        Isoelectric Point: 6.3911

>NTDB_id=189794 A6L32_RS10620 WP_002248275.1 2056612..2057205(-) (pilK) [Neisseria meningitidis strain M22718]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=189794 A6L32_RS10620 WP_002248275.1 2056612..2057205(-) (pilK) [Neisseria meningitidis strain M22718]
ATGCGCAAACAGAACGCTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTGCTGATGGT
AATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATTCTACCG
ACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCGCGCTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

85.644

100

0.878

Multiple sequence alignment