Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   B9L64_RS01965 Genome accession   NZ_CP020915
Coordinates   436477..438480 (+) Length   667 a.a.
NCBI ID   WP_003231593.1    Uniprot ID   -
Organism   Bacillus subtilis strain 50-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 431477..443480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS01925 pghL 431837..432595 (+) 759 WP_003245793.1 gamma-polyglutamate hydrolase PghL -
  B9L64_RS01930 - 432622..433071 (-) 450 WP_003245454.1 YndM family protein -
  B9L64_RS01935 fosM 433279..433713 (+) 435 WP_003231604.1 FosM family fosfomycin resistance protein -
  B9L64_RS21195 - 433622..433918 (+) 297 WP_223257629.1 hypothetical protein -
  B9L64_RS01945 dinR/lexA 434255..434872 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  B9L64_RS01950 yneA 435022..435339 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  B9L64_RS01955 dinL 435358..436011 (+) 654 WP_003231596.1 recombinase family protein -
  B9L64_RS01960 ynzC 436075..436308 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  B9L64_RS01965 recP/tkt 436477..438480 (+) 2004 WP_003231593.1 transketolase Machinery gene
  B9L64_RS01970 sirA 438633..439079 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  B9L64_RS01975 yneF 439165..439383 (+) 219 WP_003221221.1 YneF family protein -
  B9L64_RS01980 ynzD 439457..439630 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -
  B9L64_RS01985 ccdA 439850..440557 (+) 708 WP_003231585.1 cytochrome c-type biogenesis protein CcdA -
  B9L64_RS01990 yneI 440646..441008 (+) 363 WP_003245707.1 response regulator -
  B9L64_RS01995 yneJ 441087..441578 (+) 492 WP_010886519.1 CcdC family protein -
  B9L64_RS02000 yneK 441609..442037 (-) 429 WP_003231580.1 DynA interaction protein YneK -
  B9L64_RS02005 cotM 442271..442663 (-) 393 WP_010886520.1 outer spore coat protein CotM -
  B9L64_RS02010 sspP 442744..442890 (-) 147 WP_003221237.1 small acid-soluble spore protein P -
  B9L64_RS02015 sspO 442922..443068 (-) 147 WP_003244839.1 acid-soluble spore protein SspO -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 72316.39 Da        Isoelectric Point: 4.7291

>NTDB_id=189752 B9L64_RS01965 WP_003231593.1 436477..438480(+) (recP/tkt) [Bacillus subtilis strain 50-1]
MDTIEKKSVATIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTKFMNVSPANPGWFNRDRFVLSAGHGSALLYSMLHLSG
FDLSIEDLKGFRQWGSKTPGHPEFGHTAGVDATTGPLGQGIAMAVGMAIAERHLAETYNRDSFNVVDHYTYSICGDGDLM
EGISSEAASLAGHLQLGRLIVLYDSNDISLDGDLDRSFSENVKQRFEAMNWEVLYVEDGNNIEELTAAIEKARQNEKKPT
LIEVKTTIGFGSPNRAGTSGVHGAPLGKEESKLTKEAYAWTYEEDFYVPSEVYEHFAAAVKESGEKKEQEWNAQFAKYKE
VYPELAEQLELAIKGELPKDWDQEVPVYEKGSSLASRASSGEVLNGLAKKIPFFVGGSADLAGSNKTTIKNAGDFTAVDY
SGKNFWFGVREFAMGAALNGMALHGGLRVFGGTFFVFSDYLRPAIRLAALMGLPVTYVFTHDSIAVGEDGPTHEPVEQLA
SLRAMPNLSLIRPADGNETAAAWKLAVQSTDHPTALVLTRQNLPTIDQTSEEALAGVEKGAYVVSKSKNETPDALLIASG
SEVGLAIEAQAELAKENIDVSVVSMPSMDRFEKQSDEYKNEVLPADVKKRLAIEMGSSFGWGKYTGLEGDVLGIDRFGAS
APGETIINEYGFSVPNVVNRVKALINK

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=189752 B9L64_RS01965 WP_003231593.1 436477..438480(+) (recP/tkt) [Bacillus subtilis strain 50-1]
ATGGATACAATTGAAAAGAAATCAGTTGCTACCATTCGCACACTGTCAATAGACGCTATTGAAAAAGCAAATTCTGGTCA
CCCAGGGATGCCGATGGGAGCCGCTCCAATGGCATACACGCTGTGGACAAAATTTATGAACGTAAGTCCGGCAAACCCTG
GCTGGTTTAACCGTGACCGTTTTGTTTTATCTGCTGGACACGGGTCAGCACTATTATACAGCATGCTTCATTTAAGCGGG
TTTGATCTTAGTATTGAAGATCTTAAGGGATTCCGCCAGTGGGGCAGCAAAACACCAGGACATCCGGAATTCGGACATAC
TGCCGGTGTTGATGCTACAACAGGTCCGCTTGGCCAAGGAATTGCCATGGCAGTCGGTATGGCAATTGCTGAACGCCATT
TAGCGGAAACATACAACCGCGATTCATTTAACGTAGTCGATCATTATACATACAGTATTTGCGGTGATGGTGATTTAATG
GAAGGTATTTCTTCTGAAGCCGCTTCACTCGCAGGCCATCTTCAGCTTGGCCGTCTGATCGTACTATACGATTCTAATGA
CATCTCTCTTGATGGAGACCTCGACCGTTCATTCTCTGAAAACGTGAAACAGCGTTTTGAAGCAATGAATTGGGAAGTTC
TTTATGTTGAGGATGGAAACAATATTGAAGAATTAACAGCGGCTATCGAAAAAGCACGCCAAAATGAAAAGAAACCTACA
TTAATTGAAGTGAAAACGACAATCGGATTCGGTTCACCTAACCGTGCCGGTACATCCGGTGTTCACGGTGCGCCGCTTGG
TAAAGAAGAAAGCAAATTAACAAAAGAAGCTTACGCGTGGACATATGAAGAAGACTTCTACGTTCCGTCAGAAGTTTATG
AGCATTTCGCTGCAGCTGTTAAAGAATCAGGTGAGAAAAAAGAACAAGAATGGAATGCTCAATTCGCTAAATATAAAGAA
GTTTATCCTGAACTTGCTGAACAGCTTGAACTGGCAATCAAAGGAGAGCTTCCGAAGGACTGGGATCAAGAGGTTCCTGT
GTATGAAAAAGGAAGCAGTTTGGCATCCCGTGCATCTTCCGGTGAAGTTCTCAACGGACTTGCGAAAAAAATTCCTTTCT
TTGTCGGAGGTTCTGCTGACCTAGCGGGATCGAACAAAACGACTATTAAAAATGCCGGTGATTTTACAGCGGTTGATTAC
TCAGGCAAAAACTTCTGGTTTGGTGTACGTGAATTTGCGATGGGTGCGGCCTTAAACGGTATGGCGCTTCATGGCGGTCT
TCGTGTATTCGGCGGAACTTTCTTTGTCTTCTCTGATTACCTGCGTCCTGCGATTCGCCTTGCAGCGTTAATGGGCCTTC
CTGTGACATATGTCTTCACACATGACAGTATTGCGGTTGGTGAAGACGGTCCGACGCACGAGCCTGTTGAACAGCTTGCT
TCACTCCGTGCGATGCCTAACCTTTCTTTGATCCGTCCAGCAGACGGCAATGAGACAGCAGCAGCATGGAAGCTTGCAGT
GCAAAGCACTGACCACCCAACAGCGCTAGTGCTTACACGTCAAAACCTTCCTACCATCGATCAAACATCTGAAGAAGCAT
TGGCAGGAGTAGAAAAAGGTGCATATGTCGTTTCTAAATCTAAAAACGAAACACCTGACGCTCTTCTCATCGCTTCCGGA
TCAGAGGTAGGTCTTGCAATTGAAGCGCAGGCTGAATTGGCAAAAGAAAATATCGATGTTTCTGTTGTCAGCATGCCTTC
AATGGACCGTTTTGAGAAACAATCTGATGAATACAAAAACGAAGTCCTTCCTGCAGATGTGAAAAAACGTCTTGCAATTG
AAATGGGCTCATCATTTGGATGGGGCAAATACACGGGGCTTGAAGGTGACGTTCTCGGCATAGACCGATTCGGTGCATCT
GCTCCTGGTGAAACCATCATTAACGAATACGGCTTCTCAGTTCCGAACGTAGTGAATCGAGTTAAGGCATTAATCAATAA
GTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(548-657)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(5-338)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.647

99.25

0.562