Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   B9J09_RS10850 Genome accession   NZ_CP020870
Coordinates   2253296..2254906 (-) Length   536 a.a.
NCBI ID   WP_046418460.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. pauca strain De Donno     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2248296..2259906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9J09_RS10830 (B9J09_10830) pilA 2248596..2249033 (+) 438 WP_046418469.1 pilin Machinery gene
  B9J09_RS10840 (B9J09_10840) pilB 2249871..2251604 (+) 1734 WP_046418464.1 type IV-A pilus assembly ATPase PilB Machinery gene
  B9J09_RS10845 (B9J09_10845) - 2251698..2253110 (-) 1413 WP_046418462.1 sigma-54 dependent transcriptional regulator -
  B9J09_RS10850 (B9J09_10850) pilS 2253296..2254906 (-) 1611 WP_046418460.1 ATP-binding protein Regulator
  B9J09_RS10855 (B9J09_10855) sucC 2255155..2256318 (+) 1164 WP_046418841.1 ADP-forming succinate--CoA ligase subunit beta -
  B9J09_RS10860 (B9J09_10860) sucD 2256347..2257219 (+) 873 WP_046418458.1 succinate--CoA ligase subunit alpha -
  B9J09_RS13160 (B9J09_10865) - 2257486..2258097 (+) 612 WP_230949970.1 hypothetical protein -

Sequence

Protein


Download         Length: 536 a.a.        Molecular weight: 59137.39 Da        Isoelectric Point: 6.0184

>NTDB_id=189727 B9J09_RS10850 WP_046418460.1 2253296..2254906(-) (pilS) [Xylella fastidiosa subsp. pauca strain De Donno]
MLFSASLIHRIEFAPQRELYFLALYRILEAGLIAALVFSPVSILVDPESDPYLGTAVAVGYLLLATILLVWGRNERWFTP
LVFGSTVADILAATLAIHALPKASAGIAMMLLFNVAAAAILLRLRFSMILAWIAGVAMLVEYIWTVLSEGDSSRSLAELV
MFFTSYTAVAYMCHQAAQRARYSQALAEKRRAQIVNLAEINELIIRRMRTGVLVVDAANRIGLSNETAAALLGYDRQLVE
SDYDLATVAPELTMRLKCWRIGRHYEDTPLRLAPDQPEVQPRFVSLLADSGLTLIFLDDVSVVSRRAESLTLLALGRFSA
SLAHEIRNPLAAIKHASQLLEESSNLDKGDQRLLDIILKQCQRTNGIVESVLGLARRERANPENLDLVGFVSRFVDEYRQ
TLSSEYDNLEIQTLHSTVQALVDPRHLYQILAVLTHNALRYGRFPDTPAQVRIEVVYTGGSVGINVLDQGPGIPDAAVLQ
LFQPFFTTSDHGTGLGLYIARELCNANQSNLEYVAIPGSGACFRITLPGPYALIPN

Nucleotide


Download         Length: 1611 bp        

>NTDB_id=189727 B9J09_RS10850 WP_046418460.1 2253296..2254906(-) (pilS) [Xylella fastidiosa subsp. pauca strain De Donno]
GTGTTGTTCAGCGCTTCGCTGATTCATCGGATCGAATTTGCCCCGCAGCGTGAACTTTATTTTCTCGCCTTGTATCGGAT
ATTGGAGGCTGGATTGATCGCGGCCTTGGTGTTCAGTCCGGTGTCGATATTGGTGGATCCTGAGAGTGATCCATATTTGG
GCACGGCTGTCGCTGTCGGTTATTTGCTGTTGGCTACCATTTTGTTGGTCTGGGGTCGTAATGAGCGCTGGTTCACTCCA
TTAGTCTTTGGAAGTACTGTCGCCGACATTTTGGCTGCCACTCTTGCTATTCACGCCCTGCCTAAAGCCAGTGCCGGCAT
TGCGATGATGTTGTTGTTTAACGTTGCCGCCGCCGCCATCTTATTGCGGTTGCGTTTCAGCATGATCCTGGCTTGGATTG
CTGGGGTTGCGATGCTTGTGGAATACATCTGGACGGTACTCAGTGAGGGTGACTCATCACGTTCACTGGCCGAGCTCGTT
ATGTTTTTCACCAGCTACACTGCAGTGGCGTATATGTGTCATCAGGCCGCGCAGCGGGCCAGATATAGCCAAGCTCTGGC
TGAAAAGCGCCGTGCCCAGATAGTCAACTTGGCAGAGATCAACGAGCTGATTATCCGACGTATGCGGACGGGTGTGTTGG
TGGTGGATGCTGCTAATCGAATCGGTTTGAGTAACGAAACTGCAGCTGCGTTGCTGGGATACGACAGACAATTGGTCGAG
AGTGATTACGATCTCGCTACGGTTGCTCCGGAGTTGACAATGCGTCTGAAGTGTTGGCGTATCGGTCGACACTACGAAGA
TACTCCGTTGCGATTAGCGCCTGATCAACCTGAGGTCCAGCCTCGCTTTGTGAGTCTGCTTGCCGACAGTGGATTGACAT
TAATTTTCCTTGATGATGTCAGTGTTGTTTCACGCCGTGCCGAATCGTTGACTTTGTTGGCGCTTGGACGTTTTTCAGCC
AGTTTGGCGCACGAGATTCGTAATCCTTTGGCTGCAATCAAACATGCATCGCAGCTGTTGGAAGAGTCCTCCAATCTTGA
CAAAGGCGATCAACGGCTGTTGGACATTATTCTAAAGCAGTGCCAGCGGACCAATGGGATTGTGGAGAGCGTGCTTGGTT
TGGCAAGACGCGAACGTGCTAACCCGGAAAATTTGGATTTGGTCGGTTTTGTGTCCCGATTTGTCGATGAATACCGCCAG
ACATTGTCAAGCGAGTATGACAATCTGGAGATACAAACGTTGCACAGTACCGTGCAGGCACTGGTGGATCCACGCCACTT
GTACCAGATCCTCGCTGTCCTTACCCACAACGCGTTGCGTTATGGCCGCTTTCCGGATACTCCGGCACAGGTGCGTATTG
AGGTGGTATATACCGGAGGCAGCGTGGGGATCAATGTCCTTGATCAGGGGCCTGGTATACCCGATGCGGCTGTTTTGCAG
CTTTTTCAGCCTTTTTTCACTACTTCCGACCATGGTACGGGGCTTGGTCTATATATCGCTCGTGAGCTGTGCAATGCGAA
TCAATCCAATCTTGAGTACGTGGCCATTCCAGGGAGCGGGGCTTGTTTCCGGATTACTTTGCCGGGTCCGTATGCATTGA
TTCCGAATTGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(423-528)

His Kinase A (phospho-acceptor) domain (HisKA)

(314-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

37.452

98.134

0.368

Multiple sequence alignment