Detailed information NTG0189717

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: B9J09_RS09265
• Genome accession: NZ_CP020870
• Coordinates: 1898344..1900821 (-)
• Length: 825 a.a.
• NCBI ID: WP_046419125.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. pauca strain De Donno
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1893344..1905821

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B9J09_RS09245 (B9J09_09245)	lpxK	1894473..1895492 (-)	1020	WP_046418988.1	tetraacyldisaccharide 4'-kinase	-
B9J09_RS09250 (B9J09_09250)	msbA	1895489..1897237 (-)	1749	WP_046418985.1	lipid A export permease/ATP-binding protein MsbA	-
B9J09_RS09255 (B9J09_09255)	-	1897255..1897692 (-)	438	WP_004089267.1	biopolymer transporter ExbD	-
B9J09_RS09260 (B9J09_09260)	exbB	1897697..1898359 (-)	663	WP_046418980.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
B9J09_RS09265 (B9J09_09265)	comA	1898344..1900821 (-)	2478	WP_046419125.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
B9J09_RS09270 (B9J09_09270)	lolD	1901170..1901892 (-)	723	WP_023907913.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
B9J09_RS09275 (B9J09_09275)	-	1901885..1903126 (-)	1242	WP_046418978.1	lipoprotein-releasing ABC transporter permease subunit	-
B9J09_RS09280 (B9J09_09280)	-	1903152..1903532 (-)	381	WP_046418975.1	hypothetical protein	-
B9J09_RS09285 (B9J09_09285)	-	1903555..1903803 (-)	249	WP_046418973.1	succinate dehydrogenase assembly factor 2	-
B9J09_RS09290 (B9J09_09290)	-	1903924..1904709 (-)	786	WP_046418969.1	succinate dehydrogenase iron-sulfur subunit	-

Sequence

Protein

• Length: 825 a.a.
• Molecular weight: 90744.67 Da
• Isoelectric Point: 9.0670

>NTDB_id=189717 B9J09_RS09265 WP_046419125.1 1898344..1900821(-) (comA) [Xylella fastidiosa subsp. pauca strain De Donno]
MDDMKPEQRHVLQRCWVDVLSVIRHATCLRYLGFPALLPSAVALLLGCLAALTLPRLPPVWVLWIFLFAGVMLAVVVRRV
AWCGVVLFGFANCCLHGQFGLRHQLSFALEGRDLVLRGRIVSLPVPETRRTRFLLRVDTDQDQEPALRGRLLQLSWYDEN
KVVAPGPRNALHAGSVWQLHVRLRAPHSLLNPGGFDSERYALAQGIVATGYVRAPTMAREVAAATGINAWRERMSVRIAD
AVLSEASVYLRALALGDTRGLSQQDWEVLRATGLTHLIAISGFHVGMVAGACALLVSLLWRLFPHLAWRCPRPLAMALIA
VPAAAGYTVLAGASLPTVRTALMIGIVALARLTRRRAMPGHVLGLALLVVLVWDPLAILSAGFWLSFAGVAWLLWCMQDG
HAAPWRGFLSAQGVATLGLLPFTVALFGQVSFVGPFANLIAIPLWTFVVVPLALLGTALEALVPGWGSPMWRLGGTCFEW
SWQLFEYLAQTDFALWWLPESDGVALWLALLGAFWLLLPRGTPGKWLALLLWLPLLWPERERPRPGEFEMQMLDVGQGLS
IVVRTSGHTLLYDAGPAVNDGFDAGERVVVPALRASGIRRLDALVASHADSDHVGGLPAVLKAYPVDISYAPPDAPLDVE
RRCSAGDSWLWDGVQFRFLHPAPHSTYLGNESSCVLRIDTRWGSALLTGDIGKVVERGLLSQDRESVRADVVVVPHHGSA
GSSSLGFVRAVNARLALVSSGDGNRFGHPRCSVVESWSETADVLLTAHSGAVRIWVGQQGLQLRERRVWRRRFWDAVERR
RSAAILSATEDVSKERRRNETCWNW

Nucleotide

• Length: 2478 bp

>NTDB_id=189717 B9J09_RS09265 WP_046419125.1 1898344..1900821(-) (comA) [Xylella fastidiosa subsp. pauca strain De Donno]
ATGGACGATATGAAACCCGAGCAGCGACACGTGTTGCAGCGATGTTGGGTTGACGTGTTAAGTGTGATCCGGCACGCAAC
CTGCTTGCGTTACCTCGGGTTTCCGGCGTTGTTGCCGAGTGCTGTTGCGTTGCTGTTGGGTTGTCTTGCTGCACTCACCT
TGCCGCGATTACCGCCCGTATGGGTGTTGTGGATTTTTCTGTTTGCCGGAGTAATGCTCGCTGTTGTCGTGCGCCGTGTT
GCTTGGTGCGGTGTGGTGTTGTTTGGTTTTGCTAACTGTTGCTTGCATGGTCAGTTTGGTTTGCGACATCAATTGTCGTT
CGCGTTGGAGGGCCGCGATCTGGTGTTACGTGGTCGGATCGTTTCTTTGCCGGTTCCAGAGACCAGGCGCACACGTTTCT
TGTTGCGTGTGGATACCGATCAAGATCAGGAACCAGCGCTGCGTGGTCGACTGCTGCAGTTATCCTGGTATGACGAGAAT
AAGGTGGTAGCGCCGGGGCCACGCAATGCATTGCATGCTGGATCTGTATGGCAGTTGCACGTGCGTCTGCGTGCGCCGCA
CAGTTTGCTGAATCCCGGAGGTTTCGACAGCGAGCGTTATGCCCTAGCCCAGGGGATTGTTGCGACCGGTTACGTACGTG
CGCCGACGATGGCACGTGAGGTGGCGGCAGCCACTGGCATCAATGCTTGGCGGGAACGGATGTCTGTGCGTATTGCTGAT
GCGGTGTTGTCGGAAGCATCGGTGTATTTACGTGCGTTGGCGTTGGGTGATACCCGGGGCTTGTCCCAACAGGATTGGGA
AGTATTGCGCGCTACAGGGCTGACGCATTTGATTGCGATCTCGGGGTTCCATGTCGGTATGGTCGCTGGTGCCTGTGCGT
TGCTTGTGTCGTTGCTGTGGCGGCTTTTCCCACATTTGGCGTGGCGTTGTCCGCGACCACTCGCCATGGCACTCATTGCG
GTACCGGCCGCCGCCGGCTACACCGTCCTGGCTGGGGCGTCACTGCCCACAGTCAGAACCGCTTTGATGATCGGCATCGT
CGCATTGGCGCGCCTCACTCGGCGTCGTGCCATGCCGGGGCATGTCCTGGGGCTTGCCTTGCTGGTCGTACTGGTTTGGG
ATCCATTAGCCATTCTTAGTGCTGGCTTCTGGCTCAGCTTTGCCGGTGTCGCTTGGTTACTGTGGTGTATGCAAGACGGT
CATGCCGCGCCTTGGCGTGGCTTCTTATCGGCACAAGGTGTTGCAACCCTTGGGTTATTACCATTCACCGTGGCTTTATT
TGGTCAGGTTTCGTTTGTTGGGCCTTTCGCTAACTTGATTGCGATTCCGTTATGGACCTTTGTCGTTGTACCGCTGGCGT
TGTTAGGGACTGCGCTGGAAGCGTTAGTGCCAGGGTGGGGTAGCCCCATGTGGCGTTTGGGGGGAACTTGTTTCGAATGG
AGTTGGCAGCTATTCGAATACTTGGCACAGACTGATTTCGCATTGTGGTGGTTGCCGGAATCTGATGGTGTTGCATTGTG
GTTGGCCTTGCTGGGAGCGTTTTGGTTGCTGTTACCACGCGGTACGCCTGGTAAGTGGCTGGCGCTGTTGCTGTGGTTGC
CTTTGTTGTGGCCTGAGCGTGAGCGTCCCCGCCCCGGGGAGTTTGAGATGCAGATGCTGGACGTGGGGCAAGGACTGTCG
ATTGTGGTGCGTACCTCAGGCCATACGTTGTTGTACGACGCAGGTCCAGCAGTGAATGATGGTTTCGATGCCGGTGAGCG
TGTTGTGGTGCCGGCATTACGTGCCAGTGGCATCCGTCGCTTGGATGCATTGGTGGCTAGTCATGCTGATAGTGATCACG
TCGGAGGTTTGCCCGCGGTCCTGAAGGCTTATCCGGTTGATATCAGCTACGCTCCGCCGGATGCTCCACTCGACGTGGAG
CGCCGTTGCAGTGCTGGGGACAGTTGGCTGTGGGATGGAGTCCAGTTTCGTTTCTTACATCCTGCACCGCATTCGACTTA
TTTAGGTAACGAGTCCAGTTGTGTATTGCGTATCGACACGCGCTGGGGCAGTGCTTTGTTGACGGGTGACATCGGCAAAG
TGGTCGAACGTGGTTTATTGAGTCAGGATCGTGAGAGTGTACGTGCCGATGTGGTGGTCGTACCGCATCATGGGAGCGCC
GGTTCTTCCTCGCTTGGGTTTGTCCGTGCGGTTAATGCGCGGTTAGCTTTGGTATCCAGTGGTGATGGTAACCGCTTCGG
TCATCCGCGCTGTTCGGTGGTGGAGAGCTGGAGTGAAACGGCAGATGTGTTGCTTACTGCGCATAGCGGCGCAGTACGGA
TTTGGGTTGGACAGCAGGGTCTGCAGTTACGTGAACGCCGTGTTTGGCGTCGTCGATTCTGGGATGCGGTCGAACGTCGC
CGATCCGCTGCTATCCTATCCGCCACTGAAGATGTATCCAAAGAGCGTCGGAGAAACGAGACATGCTGGAACTGGTAA

Domains

Predicted by InterProScan.

• Domain of unknown function (DUF4131) (DUF4131) (58-216)

• Metallo-beta-lactamase superfamily (Lactamase_B) (554-722)

• Competence protein (Competence) (253-520)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Ralstonia pseudosolanacearum GMI1000	37.153	100	0.373