Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   B9J09_RS09260 Genome accession   NZ_CP020870
Coordinates   1897697..1898359 (-) Length   220 a.a.
NCBI ID   WP_046418980.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. pauca strain De Donno     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1892697..1903359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9J09_RS09240 (B9J09_09240) - 1893170..1893811 (-) 642 WP_010893601.1 ParA family protein -
  B9J09_RS09245 (B9J09_09245) lpxK 1894473..1895492 (-) 1020 WP_046418988.1 tetraacyldisaccharide 4'-kinase -
  B9J09_RS09250 (B9J09_09250) msbA 1895489..1897237 (-) 1749 WP_046418985.1 lipid A export permease/ATP-binding protein MsbA -
  B9J09_RS09255 (B9J09_09255) - 1897255..1897692 (-) 438 WP_004089267.1 biopolymer transporter ExbD -
  B9J09_RS09260 (B9J09_09260) exbB 1897697..1898359 (-) 663 WP_046418980.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  B9J09_RS09265 (B9J09_09265) comA 1898344..1900821 (-) 2478 WP_046419125.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B9J09_RS09270 (B9J09_09270) lolD 1901170..1901892 (-) 723 WP_023907913.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  B9J09_RS09275 (B9J09_09275) - 1901885..1903126 (-) 1242 WP_046418978.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24028.46 Da        Isoelectric Point: 8.9727

>NTDB_id=189716 B9J09_RS09260 WP_046418980.1 1897697..1898359(-) (exbB) [Xylella fastidiosa subsp. pauca strain De Donno]
MLELVKAGGWPMLPLLMLGVVALAIVLERLWTLRRNEVLPSGLGREVREWVRRGKLDQNHLESLRRNSPLGALLAAALDV
KGGVREMIRERIEDTGRHLVHRMERFLNALGTIASAGPLLGLLGTVVGMIQMFLGILDYGVGDVNQLAGGIGKALVCTAT
GMIIAIPALIFHRYFKGRITGYVIEMEQEAMLLLDAIDGLQIAIQGRNAEVVHPNAVTKD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=189716 B9J09_RS09260 WP_046418980.1 1897697..1898359(-) (exbB) [Xylella fastidiosa subsp. pauca strain De Donno]
ATGCTGGAACTGGTAAAGGCTGGCGGCTGGCCGATGTTGCCGCTGTTGATGTTAGGTGTTGTTGCATTGGCGATTGTGCT
TGAAAGGCTGTGGACTCTGCGTCGTAATGAGGTGTTGCCGTCGGGGCTGGGTCGGGAGGTTCGTGAGTGGGTGAGGCGTG
GCAAATTGGACCAAAATCATCTTGAGTCTCTGCGCCGTAATTCTCCGCTTGGTGCGCTATTGGCCGCCGCTTTGGATGTA
AAAGGTGGCGTACGTGAAATGATTCGTGAACGTATTGAGGATACAGGACGCCATCTGGTGCATCGCATGGAGCGTTTTCT
GAATGCACTCGGTACGATTGCTTCTGCAGGTCCTTTACTTGGTTTGCTAGGTACTGTGGTCGGTATGATTCAAATGTTCC
TGGGCATTCTCGATTATGGCGTGGGCGATGTGAATCAGCTTGCTGGAGGGATTGGCAAGGCATTGGTTTGCACTGCTACA
GGTATGATTATTGCGATCCCCGCTCTGATTTTTCATCGTTATTTCAAGGGGCGAATTACTGGCTACGTGATTGAGATGGA
GCAAGAGGCAATGCTCCTGCTGGATGCGATTGATGGTCTTCAGATTGCTATTCAAGGAAGAAATGCCGAAGTGGTGCACC
CCAATGCTGTCACCAAGGATTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

48.744

90.455

0.441