Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   B9J09_RS01570 Genome accession   NZ_CP020870
Coordinates   358331..360487 (+) Length   718 a.a.
NCBI ID   WP_046417958.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. pauca strain De Donno     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 353331..365487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9J09_RS01560 (B9J09_01560) - 355554..357725 (+) 2172 WP_046417956.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  B9J09_RS01565 (B9J09_01565) - 357940..358323 (+) 384 WP_046417957.1 RidA family protein -
  B9J09_RS01570 (B9J09_01570) recG 358331..360487 (+) 2157 WP_046417958.1 ATP-dependent DNA helicase RecG Machinery gene
  B9J09_RS12565 - 360562..360708 (+) 147 WP_010892888.1 hypothetical protein -
  B9J09_RS01575 (B9J09_01575) - 361071..362273 (+) 1203 WP_046417959.1 cytochrome P450 -
  B9J09_RS01580 (B9J09_01580) - 362866..364134 (+) 1269 WP_046417961.1 lipase family protein -

Sequence

Protein


Download         Length: 718 a.a.        Molecular weight: 78653.24 Da        Isoelectric Point: 8.3771

>NTDB_id=189679 B9J09_RS01570 WP_046417958.1 358331..360487(+) (recG) [Xylella fastidiosa subsp. pauca strain De Donno]
MPRARSHAPDLNVAGNAPLSVLPRVGPVLAGKFAARGIFTLQDLWLLLPLRYEDRTRLTPIAELQDGVAVQIEARVEAVE
RSFRYRPLLRVVLTDDAHHILTLRFFHFRAAQIARFTVGTRVRAYGVSKLGQYGWEIVHPSYRILVPGEAVSLNDCLDPV
YPVIEGVGPAIVRQLIREALEHLPTDAVLELLPDVWLSDLGLPTLRTALLIMHRPPLNTDIARLMVGTHPAQQRLSLEEL
LAHQLSLRRQRIALQRHSAPALPDGAALVASLLHALPFHLTAAQQRVFAQIAADVAKPVPMLRLVQGDVGSGKTVVAALA
ALLAVEQNKQVALAAPTALLAEQHFINLRDWLEPLGVRVHWLAAKVTGKARLQALNDVASGDAQVVVGTHALMQESVVFH
DLALTIVDEQHRFGVHQRLLLRDKGATAGIVPHQLVMTATPIPRTLAMAAYADLDVSVIDEMPPGRTPVQTNVLSAERRP
ELVERIRLACAQGRQVYWVCTLIDESQTEAEQAPPSSNDIGHRSEVQAAQATYEALSAQLPGVRVGLVHGRMKAAEKQRT
MRAFKCNEIDVLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGRGSVVSSCVLLYQPPLSMLARQRLEIMRQ
TNDGFAIAEKDLELRGPGELLGTRQTGLAAFRVADLARDAHLLPRVYSLANMLLDESPQLADQVIARWIGSAVRYASA

Nucleotide


Download         Length: 2157 bp        

>NTDB_id=189679 B9J09_RS01570 WP_046417958.1 358331..360487(+) (recG) [Xylella fastidiosa subsp. pauca strain De Donno]
ATGCCGCGTGCACGTTCGCATGCCCCCGACTTGAACGTAGCTGGCAATGCCCCATTGTCGGTGCTGCCGCGAGTTGGGCC
GGTATTAGCTGGAAAATTCGCTGCGCGTGGCATCTTCACCTTGCAGGATTTGTGGCTACTGCTCCCATTACGTTATGAGG
ACCGTACCCGGCTAACCCCGATTGCCGAGCTTCAGGATGGGGTTGCGGTTCAGATCGAGGCCCGAGTGGAAGCGGTGGAG
CGTAGTTTCCGTTACCGGCCGCTATTACGCGTGGTGTTGACCGACGACGCACATCACATACTGACGCTGCGTTTTTTCCA
TTTTCGCGCCGCGCAGATTGCGCGGTTTACTGTCGGCACAAGGGTGCGTGCGTATGGCGTGTCCAAACTTGGCCAATATG
GTTGGGAGATTGTCCATCCCAGCTACCGCATCCTTGTCCCTGGTGAAGCTGTCAGCCTCAATGACTGCTTGGACCCGGTG
TATCCGGTGATTGAGGGTGTCGGGCCTGCCATCGTGCGTCAGCTCATCCGCGAAGCGTTGGAACATTTACCTACGGATGC
AGTCTTAGAACTCTTGCCAGACGTTTGGTTGAGTGACCTTGGCCTGCCAACGCTGCGTACTGCCCTACTGATCATGCACC
GGCCCCCGCTGAATACGGATATTGCCCGATTGATGGTGGGCACTCACCCCGCGCAGCAGCGCTTGTCGTTGGAAGAATTG
CTTGCCCACCAACTTAGCTTGCGTCGTCAGCGTATTGCATTGCAACGTCATTCCGCTCCCGCATTGCCTGATGGAGCGGC
TTTGGTGGCCTCTTTGTTGCACGCACTGCCGTTTCACCTCACTGCTGCGCAGCAACGGGTATTCGCCCAGATTGCTGCTG
ATGTGGCCAAGCCGGTCCCAATGCTGCGTCTTGTGCAGGGTGATGTTGGCAGCGGTAAGACCGTAGTTGCAGCATTGGCC
GCATTGCTTGCTGTGGAGCAAAACAAGCAGGTGGCTCTGGCGGCACCGACAGCGTTACTGGCCGAGCAACACTTTATCAA
CCTGCGTGACTGGCTGGAGCCATTGGGCGTGCGTGTGCATTGGTTGGCTGCCAAGGTGACCGGCAAGGCCCGTCTCCAAG
CGCTGAATGATGTGGCCTCTGGTGATGCGCAGGTGGTGGTCGGTACACATGCCCTGATGCAGGAGTCTGTGGTGTTTCAT
GACTTGGCACTGACCATTGTCGATGAACAGCACCGTTTTGGTGTCCATCAGCGCTTGTTGCTTCGTGACAAAGGGGCCAC
TGCTGGCATCGTGCCGCATCAGTTAGTGATGACCGCCACACCGATTCCACGCACCCTAGCGATGGCTGCGTATGCTGATT
TGGATGTTTCGGTGATTGACGAAATGCCACCTGGCCGTACCCCGGTGCAAACGAATGTATTGAGTGCTGAGCGTCGCCCG
GAACTGGTGGAACGTATCCGTCTGGCTTGTGCTCAGGGGCGCCAGGTTTATTGGGTGTGTACGCTGATCGACGAAAGCCA
AACGGAAGCAGAACAGGCACCCCCCAGCAGTAACGATATTGGGCATCGCAGCGAGGTACAGGCGGCACAGGCCACCTATG
AAGCACTGTCTGCACAATTGCCTGGTGTCCGTGTCGGACTCGTGCATGGGCGCATGAAGGCAGCGGAAAAACAGCGGACA
ATGCGTGCATTCAAATGCAACGAAATTGATGTCTTGGTTGCTACCACGGTGATTGAGGTGGGTGTCGATGTCCCCAATGC
GTCGCTCATGATTATCGAAAATGCTGAGCGTTTGGGTTTAGCGCAACTCCATCAGTTACGTGGTCGGGTCGGACGTGGTT
CTGTTGTGTCAAGTTGCGTTCTGTTGTATCAGCCCCCGCTGTCGATGCTGGCGCGTCAGCGTTTGGAGATCATGCGCCAG
ACCAATGATGGTTTTGCGATTGCTGAAAAAGATCTGGAATTACGTGGTCCCGGCGAATTGTTGGGGACACGTCAAACAGG
TCTTGCCGCGTTTCGTGTTGCTGACCTTGCCCGCGATGCCCATCTGCTGCCTCGCGTGTATTCGTTGGCGAACATGTTGC
TTGACGAATCGCCACAGTTAGCTGATCAAGTGATTGCGCGCTGGATTGGTAGTGCGGTGCGTTATGCATCCGCCTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(25-181)

DEAD/DEAH box helicase (DEAD)

(283-416)

Helicase conserved C-terminal domain (Helicase_C)

(534-613)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(641-701)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

48.121

96.379

0.464
  recG/mmsA Streptococcus pneumoniae R6

37.81

95.404

0.361
  recG/mmsA Streptococcus pneumoniae R36A

37.81

95.404

0.361