Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BC375_RS10900 Genome accession   NZ_CP016610
Coordinates   2251719..2253131 (-) Length   470 a.a.
NCBI ID   WP_046418462.1    Uniprot ID   -
Organism   Xylella fastidiosa strain Salento-2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2246719..2258131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC375_RS10875 (BC375_10190) - 2246875..2247321 (+) 447 WP_010894960.1 pilin -
  BC375_RS10880 (BC375_10195) - 2247582..2247785 (-) 204 WP_230950314.1 hypothetical protein -
  BC375_RS10885 (BC375_10200) - 2248617..2249054 (+) 438 WP_046418469.1 pilin -
  BC375_RS10895 (BC375_10210) pilB 2249892..2251625 (+) 1734 WP_046418464.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BC375_RS10900 (BC375_10215) pilR 2251719..2253131 (-) 1413 WP_046418462.1 sigma-54 dependent transcriptional regulator Regulator
  BC375_RS10905 (BC375_10220) - 2253317..2254927 (-) 1611 WP_046418460.1 ATP-binding protein -
  BC375_RS10910 (BC375_10225) sucC 2255176..2256339 (+) 1164 WP_046418841.1 ADP-forming succinate--CoA ligase subunit beta -
  BC375_RS10915 (BC375_10230) sucD 2256368..2257240 (+) 873 WP_046418458.1 succinate--CoA ligase subunit alpha -
  BC375_RS13060 (BC375_10235) - 2257507..2258118 (+) 612 WP_230949970.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 51300.19 Da        Isoelectric Point: 7.2159

>NTDB_id=189676 BC375_RS10900 WP_046418462.1 2251719..2253131(-) (pilR) [Xylella fastidiosa strain Salento-2]
MNESRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSGIELVKKIVRHYPRTPVA
MITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSPSQRLLGESSPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGRFRHDLYYRINVIEIRVPPLRERAGDLP
HLAAAIVVRLAHTHGRAVPLLSPSALEALEHYSFPGNVRELENILERALALTEDDHIGAADLHLPQGSLHGQGLPLPLVP
TALPIVPVDASASVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=189676 BC375_RS10900 WP_046418462.1 2251719..2253131(-) (pilR) [Xylella fastidiosa strain Salento-2]
ATGAATGAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTAT
GGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCA
CCGACATGCGTTTACCTGATGGCAGTGGCATTGAGCTGGTGAAAAAGATTGTGCGTCATTATCCACGCACCCCGGTGGCC
ATGATCACTGCTTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTGT
TGATCTGAACGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGC
CACAAAGCCCCAGCCAACGTCTCCTTGGTGAATCATCACCGATGGCTCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGTCAAGCCCCGGTTTATATCCTTGGTGAATCAGGAGTTGGTAAAGAACTGGTTGCACGTACGATCCACGAACAGAGTGT
GCGTGCTGCTGGGGCGTTCGTGCCGGTCAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACA
AGAAAGGGAGTTTCACCGGTGCGCATACTGATAAGCCAGGTTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGAT
GAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGC
AACCGTTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGCT
TCCGTCACGATTTGTACTACCGCATCAATGTGATCGAGATACGTGTTCCACCGCTACGTGAGCGTGCTGGCGATTTGCCG
CATCTTGCTGCAGCCATTGTGGTTCGCTTGGCACACACGCATGGGCGGGCGGTCCCGTTGCTTTCACCCTCCGCCTTGGA
GGCGTTAGAACATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAG
ATGATCATATCGGTGCCGCGGATCTGCACCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCCC
ACAGCTCTCCCCATTGTGCCTGTGGACGCATCAGCATCGGTGGAGGGTGAGAATACGCCGGCTGCCTTACCGTCGTACAT
GGAGCAGCTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAGAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTTG
GCATCACTTTCCGTGCATTGCGTTACAAACTAAAGAAGCTGGGCATGGAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.422

99.787

0.583
  pilR Acinetobacter baumannii strain A118

47.368

100

0.479

Multiple sequence alignment