Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   B9H01_RS08915 Genome accession   NZ_CP020863
Coordinates   1752744..1753784 (-) Length   346 a.a.
NCBI ID   WP_012027749.1    Uniprot ID   -
Organism   Streptococcus suis strain SC19     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1747744..1758784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9H01_RS08880 (B9H01_08880) - 1748400..1748708 (-) 309 WP_012027746.1 YlxQ-related RNA-binding protein -
  B9H01_RS08885 (B9H01_08885) rnpM 1748695..1748991 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  B9H01_RS08890 (B9H01_08890) nusA 1749008..1750150 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  B9H01_RS08895 (B9H01_08895) rimP 1750224..1750694 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  B9H01_RS08905 (B9H01_08905) trmB 1751265..1751903 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  B9H01_RS08910 (B9H01_08910) ccrZ 1751900..1752694 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  B9H01_RS08915 (B9H01_08915) pptB 1752744..1753784 (-) 1041 WP_012027749.1 ABC transporter permease Regulator
  B9H01_RS08920 (B9H01_08920) pptA 1753781..1754515 (-) 735 WP_012027751.1 ABC transporter ATP-binding protein Regulator
  B9H01_RS08925 (B9H01_08925) - 1754578..1754991 (+) 414 WP_012027752.1 HIT family protein -
  B9H01_RS08930 (B9H01_08930) - 1754993..1755295 (+) 303 WP_012027753.1 methyl-accepting chemotaxis protein -
  B9H01_RS08935 (B9H01_08935) - 1755404..1756597 (-) 1194 WP_012027754.1 LCP family protein -
  B9H01_RS08940 (B9H01_08940) - 1756594..1757121 (-) 528 WP_012027755.1 GNAT family N-acetyltransferase -
  B9H01_RS08945 (B9H01_08945) tsaE 1757114..1757554 (-) 441 WP_012775330.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 346 a.a.        Molecular weight: 40147.52 Da        Isoelectric Point: 10.1278

>NTDB_id=189658 B9H01_RS08915 WP_012027749.1 1752744..1753784(-) (pptB) [Streptococcus suis strain SC19]
MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYRQLLLSFPENPLPIVLVVIAISLLVLLSGRIATYLEE
ADQIFLLTKEKDILQGLEVAARRTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVSGLLTLLVLKCLFVKRQLVAYQSQGV
LDWSKAIQDEQKRKQSILRFFALFTTVKGIGTTVKPRSYLNGILRLVKSRQTWFYLYLRAFLRSGDYLGLTIRLLLLAIL
SLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQYITQLYPLEKDSKKIGLQNLLRVILYSLLVVELGFALLFSKENA
MVVVLLLVGIFLHEIYLPLKLKKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=189658 B9H01_RS08915 WP_012027749.1 1752744..1753784(-) (pptB) [Streptococcus suis strain SC19]
ATGAAAGAATTGTTTCAACAACGCCGACTAGATTTTTTAAATCGTTGTTCCAAGTATCTGCGCTATGTTCTGAATGACCA
TTTTGTTTTGGTTCTCATGGTTTTATTAGGCTTTTTGAGTTTGCAATATCGTCAATTATTGTTGTCATTCCCTGAGAATC
CGTTGCCGATTGTTTTGGTGGTTATTGCAATCAGTCTACTGGTGCTATTGTCCGGAAGAATTGCGACTTATTTAGAAGAA
GCTGATCAAATCTTCCTATTGACCAAGGAAAAAGACATTCTGCAAGGACTCGAGGTTGCAGCCAGACGCACGGTCTTGTT
TTGGTCCTCTATACAGGTGGTGGTTCAGCTTGTTTTGTTACCAATCTATTTGAAACTGGGTTTACCGGTGTGGATGATTG
TATCTGGTCTTCTTACTTTGTTGGTTTTAAAATGTCTTTTTGTCAAGCGCCAATTAGTGGCTTATCAGTCACAGGGAGTA
TTGGACTGGTCTAAGGCTATTCAAGATGAACAAAAAAGGAAACAGTCTATTTTACGTTTCTTTGCCTTATTTACAACGGT
TAAAGGAATCGGTACGACTGTTAAACCGAGAAGCTATCTCAATGGAATCTTGCGTCTCGTCAAGTCGAGACAGACTTGGT
TTTATCTCTACTTACGGGCTTTCTTGCGTTCAGGAGACTACTTGGGCTTGACGATACGTCTACTGTTGTTGGCGATTTTG
TCCCTATTTGCCATTGAAGAATCGTGGTTATCCATCGGCCTAGTTTTAGTCTTTCATTATTTGCTTGTCTTCCAGTTGTT
GGGGCTTTACAAGCATTATGATTATCAATATATAACACAACTGTATCCTCTGGAGAAAGATTCCAAGAAAATTGGTCTTC
AGAATTTGCTTAGAGTGATTTTATATAGTCTATTAGTAGTGGAATTGGGCTTTGCTCTGCTATTTTCTAAAGAGAATGCG
ATGGTAGTCGTCTTACTTCTCGTGGGGATTTTCTTGCATGAAATATATTTGCCTCTAAAATTAAAAAAATTGATTGACTA
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

46.023

100

0.468

  pptB Streptococcus thermophilus LMD-9

45.455

100

0.462