Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   BCY75_RS08215 Genome accession   NZ_CP016602
Coordinates   1624293..1626407 (-) Length   704 a.a.
NCBI ID   WP_231118784.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain WiKim52     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1619293..1631407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCY75_RS08190 (BCY75_08190) - 1619461..1620405 (-) 945 WP_065825719.1 hypothetical protein -
  BCY75_RS08195 (BCY75_08195) - 1620488..1622206 (-) 1719 WP_065825720.1 ribonuclease J -
  BCY75_RS08200 (BCY75_08200) rpsO 1622409..1622678 (-) 270 WP_004271112.1 30S ribosomal protein S15 -
  BCY75_RS08205 (BCY75_08205) rpsT 1622955..1623209 (+) 255 WP_004271117.1 30S ribosomal protein S20 -
  BCY75_RS08210 (BCY75_08210) holA 1623264..1624292 (-) 1029 WP_065825721.1 DNA polymerase III subunit delta -
  BCY75_RS08215 (BCY75_08215) comEC 1624293..1626407 (-) 2115 WP_231118784.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BCY75_RS08220 (BCY75_08220) - 1626548..1627036 (-) 489 WP_004270740.1 ComE operon protein 2 -
  BCY75_RS08225 (BCY75_08225) comEA 1627095..1627766 (-) 672 WP_004270751.1 helix-hairpin-helix domain-containing protein Machinery gene
  BCY75_RS08230 (BCY75_08230) - 1627843..1628889 (-) 1047 WP_081303852.1 SepM family pheromone-processing serine protease -
  BCY75_RS08235 (BCY75_08235) coaD 1628891..1629385 (-) 495 WP_065825725.1 pantetheine-phosphate adenylyltransferase -
  BCY75_RS08240 (BCY75_08240) rsmD 1629397..1629951 (-) 555 WP_065825726.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BCY75_RS08245 (BCY75_08245) - 1629957..1630247 (-) 291 WP_004270748.1 YlbG family protein -
  BCY75_RS08250 (BCY75_08250) - 1630267..1631355 (-) 1089 WP_065825727.1 CAP-associated domain-containing protein -

Sequence

Protein


Download         Length: 704 a.a.        Molecular weight: 79807.20 Da        Isoelectric Point: 9.4030

>NTDB_id=189562 BCY75_RS08215 WP_231118784.1 1624293..1626407(-) (comEC) [Latilactobacillus curvatus strain WiKim52]
MVSGLVLCLGGCRFWLARRTYEQPVRPNNQVYKIQPDTIKVAGDQIQLMAQGQNDDQRVVCYYRCQSSAEKRRWQTTNQP
LLLAGDIELERIQGATNRNEFDYARFMGQQKHCFYQANIIDGTVFRRIPPQGWLDWFHQRRQQGLIYLRQLPPALSFHAE
ALLCGVRESDGLAYQNVLGQLGIIHLLSLSGLHVFYFVTIIRRLATLCRVPREWVNVSLFCLLPLYALFVGGGTSITRAI
GLILLRLICEVSHFQQSRLDSWSWVLLVNLLWQPYLLISMGGLLSYLMAFGLIYQRRHGTFTTAFWLGLLSLPVCLRFNY
RWHILTILINGIVAPIFLPVMLGLIMVAICLWPVSHMIVWLEEGLLTTLYKGLAWIATFPYATITFGKIQLIPLFLIVIG
TLWLMASTGRRAKWGWGAVISLYVISFIGIHFNPVGRVIMFDIGQGDSLLIQQPFNRHNLLIDTGGRLALPQEKWQRRQI
VSRAEKVTVNYLYSCGIDHLEAIALSHQDADHIGDLNEIMQHIRVKRLICAAGLPQNRQFQRQVRPHLTKVAIEPYLADQ
HFMIGHQQINVLAPVVAGPGGNADSLVLQTQIGGASWLFTGDLEKAGEVAIVDRYPQLRVDYLKVGHHGSQTASDPQSIA
TWQVKGALISAGRHNRYGHPHAATLQTLKRANVPFWNTADCGMLEWRYGFGQVPMIKTTLKDCD

Nucleotide


Download         Length: 2115 bp        

>NTDB_id=189562 BCY75_RS08215 WP_231118784.1 1624293..1626407(-) (comEC) [Latilactobacillus curvatus strain WiKim52]
ATGGTCAGTGGACTGGTACTGTGTTTAGGCGGTTGCCGTTTTTGGCTGGCACGGCGCACCTACGAACAGCCGGTTAGACC
AAATAATCAAGTATATAAGATTCAACCCGATACGATCAAAGTGGCTGGCGATCAGATTCAATTAATGGCGCAGGGGCAGA
ATGATGACCAACGTGTTGTTTGCTACTATCGCTGCCAGAGTTCAGCGGAAAAACGCCGTTGGCAAACGACGAATCAGCCG
TTATTATTAGCGGGTGATATTGAATTAGAGCGTATCCAAGGTGCTACTAACCGGAATGAGTTCGACTATGCGCGCTTTAT
GGGGCAGCAAAAGCATTGTTTTTATCAAGCAAATATAATTGACGGAACGGTCTTTAGACGCATTCCACCACAAGGTTGGC
TAGATTGGTTCCACCAACGGCGCCAACAGGGGCTGATTTATCTCCGACAATTGCCACCGGCGTTGAGTTTTCATGCAGAG
GCGTTGTTATGTGGTGTTCGAGAGTCAGATGGCCTGGCCTACCAGAATGTGTTAGGTCAATTGGGGATTATTCATTTATT
GAGTTTATCCGGATTGCATGTATTCTACTTTGTGACAATCATTCGTCGATTGGCAACGCTGTGTCGAGTCCCGCGTGAAT
GGGTGAATGTTAGCTTGTTTTGTTTGCTACCCCTTTATGCGTTGTTTGTGGGGGGAGGCACGAGTATTACACGCGCTATC
GGGCTGATCTTACTACGATTAATCTGCGAAGTAAGTCATTTTCAGCAATCGCGTTTAGATAGTTGGAGTTGGGTATTGCT
GGTCAATCTTTTATGGCAGCCGTATTTATTAATCAGTATGGGGGGATTGCTGAGCTATCTGATGGCTTTTGGATTGATTT
ATCAGCGGCGCCATGGTACTTTTACAACGGCATTTTGGCTAGGCTTGTTAAGTTTACCGGTGTGCTTGCGGTTTAATTAT
CGTTGGCATATCTTGACGATTTTGATTAATGGGATTGTCGCGCCGATTTTCTTACCAGTCATGTTGGGTTTAATTATGGT
AGCGATTTGCTTATGGCCTGTTAGTCATATGATAGTTTGGTTAGAAGAAGGCCTGCTAACGACGCTGTATAAAGGATTAG
CTTGGATTGCAACGTTCCCATATGCGACAATTACTTTCGGTAAAATCCAGCTAATACCACTCTTTTTAATTGTGATAGGC
ACACTATGGTTGATGGCAAGTACTGGTCGGCGAGCAAAGTGGGGCTGGGGGGCTGTTATCAGCCTGTATGTCATTAGTTT
TATTGGTATCCACTTTAATCCGGTTGGCCGCGTGATTATGTTTGATATCGGGCAAGGCGATAGCCTGTTGATTCAACAAC
CCTTCAATCGACATAACCTGTTAATTGACACCGGCGGCCGACTAGCTTTACCGCAAGAAAAGTGGCAACGGCGGCAAATT
GTGAGTCGGGCGGAAAAAGTAACAGTTAATTACCTCTACAGCTGTGGCATTGATCATTTAGAGGCAATCGCATTATCGCA
TCAGGATGCTGATCATATAGGGGACTTAAATGAAATTATGCAACATATCCGAGTTAAACGGTTGATTTGTGCTGCGGGCT
TACCGCAAAACCGGCAGTTTCAACGGCAAGTGCGGCCGCATCTTACAAAAGTTGCAATTGAGCCTTATTTGGCGGACCAA
CATTTTATGATTGGTCACCAACAAATCAATGTGTTAGCGCCAGTGGTGGCCGGACCAGGCGGGAATGCTGACTCACTCGT
TTTGCAAACGCAAATTGGTGGTGCGAGTTGGTTATTTACTGGTGATTTAGAAAAAGCGGGTGAAGTGGCAATCGTTGATC
GCTACCCACAATTACGCGTTGATTACCTAAAGGTGGGTCACCATGGCAGTCAAACGGCGAGTGATCCCCAGTCAATTGCG
ACGTGGCAGGTAAAAGGGGCGTTGATTTCTGCGGGACGCCATAATCGTTATGGTCATCCACATGCCGCAACGTTGCAGAC
TTTAAAACGTGCGAACGTCCCATTTTGGAATACGGCTGACTGTGGGATGCTGGAATGGCGCTATGGTTTTGGCCAAGTGC
CAATGATTAAAACAACACTAAAGGATTGTGACTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(444-651)

Competence protein (Competence)

(173-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

62.942

100

0.632

Multiple sequence alignment