Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   BA953_RS17085 Genome accession   NZ_CP016557
Coordinates   190102..191283 (+) Length   393 a.a.
NCBI ID   WP_065741874.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain 58     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 185102..196283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA953_RS17070 (BA953_17070) - 186008..186985 (+) 978 WP_065741872.1 GTP-binding protein -
  BA953_RS17075 (BA953_17075) clcA 187393..188793 (+) 1401 WP_029236033.1 H(+)/Cl(-) exchange transporter ClcA -
  BA953_RS17080 (BA953_17080) - 188912..189886 (+) 975 WP_065741873.1 TDT family transporter -
  BA953_RS17085 (BA953_17085) cqsA 190102..191283 (+) 1182 WP_065741874.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  BA953_RS17090 (BA953_17090) cqsS 191318..193375 (-) 2058 WP_231115551.1 hybrid sensor histidine kinase/response regulator Regulator
  BA953_RS17095 (BA953_17095) - 193558..194598 (-) 1041 WP_065740104.1 IS481 family transposase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44015.12 Da        Isoelectric Point: 6.4970

>NTDB_id=189173 BA953_RS17085 WP_065741874.1 190102..191283(+) (cqsA) [Vibrio coralliilyticus strain 58]
MNTLNHYPPLPDFINNKINFYLDDLINTNKNGKHLVLGKRPQSGDLVLQSNDYLDLSNNPDIIDHHISSIMSRKNSPFMS
GIFLQDESSKPEVEEKLAKYVGFQSCLLSQSGWAANTALLQTICDSETNVYIDFFAHMSLWEGARIAGANIHPFMHNNVK
HLNKLINRHGPGIVLVDSVYSTIGTIAPLVELVLLAKEYGCAILVDESHSLGTHGKHGAGLLQSLKLSHQVDFMTASLAK
TFAYRAGAIWCNNRANDCVPFVAYPAIFSSTMLPHELDRLDKTLDIIKEQDKERAYLQELSDYLKTNLANIGLTIRSQSQ
IIAVETGDERNTEKVRDFFESQGIFGAVFCRPATTPNKNIIRFSLNSSTTKEEVNKIIRACQTAYELPDMYFI

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=189173 BA953_RS17085 WP_065741874.1 190102..191283(+) (cqsA) [Vibrio coralliilyticus strain 58]
ATGAATACGCTTAACCATTACCCTCCTTTGCCAGATTTTATTAATAATAAAATAAATTTCTATCTGGATGACTTAATTAA
TACCAATAAGAACGGTAAGCATTTAGTTCTTGGAAAAAGGCCGCAAAGTGGCGACCTCGTTTTGCAAAGTAATGATTACC
TCGATTTATCCAATAACCCCGATATCATTGATCACCATATTAGTTCTATTATGTCACGTAAAAATAGCCCATTTATGTCA
GGTATATTTTTGCAGGATGAAAGCTCCAAGCCTGAAGTTGAAGAAAAACTCGCCAAGTATGTCGGATTTCAATCTTGTTT
ACTTTCTCAATCTGGTTGGGCGGCCAATACTGCCTTACTACAAACCATTTGTGACAGTGAAACAAATGTCTACATCGACT
TTTTTGCTCATATGTCTTTATGGGAAGGTGCGCGTATCGCCGGAGCGAACATCCATCCCTTTATGCATAATAACGTCAAG
CATTTGAATAAATTGATAAACAGACATGGCCCTGGAATCGTCCTTGTCGATTCGGTTTACAGTACCATAGGCACCATTGC
GCCCTTAGTCGAGCTAGTGTTACTCGCGAAGGAATATGGCTGTGCGATATTAGTCGATGAATCACACTCCCTAGGTACTC
ACGGTAAACATGGTGCTGGTTTGTTACAAAGCTTAAAACTAAGTCATCAAGTCGACTTTATGACCGCCAGTTTAGCAAAA
ACGTTTGCCTATCGAGCTGGTGCTATTTGGTGCAACAATCGCGCTAATGATTGTGTACCATTTGTGGCTTACCCCGCGAT
ATTTAGCTCTACAATGTTACCACATGAGTTGGATAGGCTCGATAAGACACTAGATATAATAAAAGAACAAGATAAAGAAA
GAGCTTACTTACAGGAGTTAAGCGATTATTTAAAAACTAACCTAGCAAATATTGGGCTAACTATTCGAAGTCAGTCGCAA
ATAATAGCGGTTGAAACGGGAGATGAACGTAACACCGAAAAAGTGAGAGACTTTTTTGAATCACAAGGAATATTTGGTGC
GGTATTTTGTCGACCCGCAACGACACCTAATAAAAACATAATACGTTTTTCACTTAATAGCTCTACCACTAAAGAAGAAG
TAAATAAAATCATTCGCGCTTGTCAGACGGCTTACGAACTTCCAGATATGTATTTTATTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

63.117

97.964

0.618

Multiple sequence alignment