Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   BA953_RS13770 Genome accession   NZ_CP016556
Coordinates   2978796..2980190 (+) Length   464 a.a.
NCBI ID   WP_019275536.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain 58     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2973796..2985190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA953_RS25175 - 2973988..2974383 (+) 396 WP_231115476.1 hypothetical protein -
  BA953_RS13755 (BA953_13755) - 2974479..2975708 (-) 1230 WP_065741388.1 integrase domain-containing protein -
  BA953_RS13765 (BA953_13765) uvrB 2976502..2978532 (+) 2031 WP_065741389.1 excinuclease ABC subunit UvrB -
  BA953_RS13770 (BA953_13770) luxO 2978796..2980190 (+) 1395 WP_019275536.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  BA953_RS13775 (BA953_13775) luxU 2980194..2980538 (+) 345 WP_172851240.1 quorum-sensing phosphorelay protein LuxU -
  BA953_RS13780 (BA953_13780) - 2980524..2981411 (-) 888 WP_019275535.1 YvcK family protein -
  BA953_RS13785 (BA953_13785) moaA 2981717..2982706 (+) 990 WP_038510252.1 GTP 3',8-cyclase MoaA -
  BA953_RS13790 (BA953_13790) moaB 2982796..2983308 (+) 513 WP_006963014.1 molybdenum cofactor biosynthesis protein B -
  BA953_RS13795 (BA953_13795) moaC 2983321..2983812 (+) 492 WP_065741391.1 cyclic pyranopterin monophosphate synthase MoaC -
  BA953_RS13800 (BA953_13800) moaD 2983809..2984054 (+) 246 WP_065741392.1 molybdopterin synthase sulfur carrier subunit -
  BA953_RS13805 (BA953_13805) moaE 2984054..2984509 (+) 456 WP_006963011.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51738.07 Da        Isoelectric Point: 5.8826

>NTDB_id=189169 BA953_RS13770 WP_019275536.1 2978796..2980190(+) (luxO) [Vibrio coralliilyticus strain 58]
MQHNTQTQKSKYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNFRTPDLILLDLRLPDMTGMDVLHAVKQKM
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSHTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKDFVRLAPEVVSRFAQYEWPGNVRQLQNVLRNVVVLNNGENISMDMLPPPLNQPVENQI
RVDLQDKDSFSVHDIFPLWLTEKKAIEQAIQACEGNIPKAAGYLDVSPSTLYRKLQNWNTKETQ

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=189169 BA953_RS13770 WP_019275536.1 2978796..2980190(+) (luxO) [Vibrio coralliilyticus strain 58]
ATGCAACATAATACGCAAACACAAAAGTCCAAATATCTTTTGATGGTTGAAGATACTGCGTCGGTCGCGGCGTTGTACCG
TTCTTATCTCACCCCTCTGGGTATCGATATCAACATTGTTGGTACCGGGCGTGATGCCATTGAAAGCCTCAACTTTCGCA
CTCCTGATTTAATCCTATTGGACCTTCGTCTTCCCGACATGACAGGTATGGATGTTTTGCATGCAGTGAAACAGAAAATG
CCTGATGTTCCAGTGATCTTCATGACGGCCCATGGCTCGATTGATACCGCTGTAGAAGCGATGCGCCATGGTGCTCAGGA
TTTCCTTATCAAACCGTGTGAAGCAGACCGACTCCGTGTCACGGTTAACAACGCTATTCGCAAAGCGACCAAGTTGAAAA
ATGAAGCTGATAATCCGGGTAACCAGAATTATCAAGGCTTTATCGGTAGTAGCCACACTATGCAGGCTGTGTATCGTACC
ATCGACTCCGCCGCATCCAGTAAAGCCAGTATTTTCATCACTGGTGAAAGTGGTACGGGTAAAGAGGTGTGTGCAGAGGC
CATTCATGCGGCAAGTAAGCGTGGTGACAAGCCCTTCATCGCGATCAACTGTGCGGCTATTCCAAAAGATCTGATTGAAA
GTGAATTGTTTGGTCATGTGAAAGGCGCGTTTACCGGCGCTGCCACTGATCGACAAGGCGCGGCTGAGTTGGCTGATGGA
GGCACGCTGTTCCTTGACGAACTGTGTGAGATGGATCTGGATCTGCAAACTAAGCTACTACGCTTTATTCAGACGGGTAC
CTTCCAGAAAGTCGGTTCTTCGAAAATGAAAAGCGTCGACGTGCGTTTCGTCTGTGCAACCAACCGAGACCCTTGGAAAG
AGGTGCAGGAAGGTCGCTTCCGTGAAGACTTATATTATCGTTTATACGTAATTCCTTTGCACCTACCTCCTTTGAGGGAG
CGTGGCGATGATGTCATAGAAATTGCTTATTCTCTGCTAGGCTTTATGTCTAAAGAGGAAGGAAAAGACTTTGTCCGACT
GGCACCAGAAGTCGTAAGCCGCTTCGCTCAATACGAGTGGCCGGGTAATGTTCGTCAATTGCAAAACGTACTGAGAAACG
TCGTGGTTCTTAACAACGGTGAAAACATCTCCATGGATATGTTGCCGCCTCCATTGAATCAGCCGGTCGAAAATCAGATC
AGGGTAGACTTGCAGGACAAAGACAGTTTTTCTGTGCATGACATTTTCCCTCTGTGGTTAACAGAGAAGAAAGCTATTGA
GCAAGCGATTCAGGCCTGTGAAGGGAATATTCCTAAAGCCGCGGGCTATTTAGACGTCAGTCCATCAACGCTTTATCGCA
AGCTGCAAAACTGGAACACGAAGGAAACACAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-457)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.946

96.552

0.849
  pilR Pseudomonas aeruginosa PAK

38.085

96.767

0.369

Multiple sequence alignment