Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   BBH51_RS03045 Genome accession   NZ_CP016553
Coordinates   615100..617529 (+) Length   809 a.a.
NCBI ID   WP_005553347.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain IDH781     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 610100..622529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH51_RS03025 (BBH51_03025) - 611856..612218 (+) 363 WP_005542369.1 cupin domain-containing protein -
  BBH51_RS03030 (BBH51_03030) folK 612289..612789 (-) 501 WP_005550118.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  BBH51_RS03035 (BBH51_03035) pcnB 612782..614248 (-) 1467 WP_005553345.1 polynucleotide adenylyltransferase PcnB -
  BBH51_RS03040 (BBH51_03040) dksA 614365..614802 (-) 438 WP_005542366.1 RNA polymerase-binding protein DksA -
  BBH51_RS03045 (BBH51_03045) rec2 615100..617529 (+) 2430 WP_005553347.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BBH51_RS03050 (BBH51_03050) msbA 617576..619324 (+) 1749 WP_005553349.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  BBH51_RS03055 (BBH51_03055) lpxK 619343..620317 (+) 975 WP_005542363.1 tetraacyldisaccharide 4'-kinase -
  BBH51_RS03060 (BBH51_03060) - 620339..620518 (+) 180 WP_005542362.1 Trm112 family protein -
  BBH51_RS03065 (BBH51_03065) kdsB 620520..621293 (+) 774 WP_005542361.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 809 a.a.        Molecular weight: 92258.97 Da        Isoelectric Point: 9.6635

>NTDB_id=189126 BBH51_RS03045 WP_005553347.1 615100..617529(+) (rec2) [Aggregatibacter actinomycetemcomitans strain IDH781]
MSVSLDKLAIALIFSGLTLLFLPDRFLLSWQTACYLLLLLCPLMLLAYALRQDKIKQIVMWLLILMIQSAYVHQSAISIL
TQADNLANLPKTVQREFTVEEILHQQHYQTLVIRAKLAENLPEQRIYAQWKLKQPVNPGERYAGNLRLRALSSRLNFDGF
DRQPWYFGQHITAWAEIKSAVKLENVFSLRQTALNQALQQTENLPRQGLLLALGFGERFRLDQKTWQIYQKTNTAHLIAI
SGLHIGLAMMLGFTLARLLQFALPTRYISPTFPILCGFIFALLYSQLAGLAIPTLRAMIALAMLYAIQYWRRYWTVWQFL
LRVIALLIFIDPLMLLSTSFWLSVGAVTCLIVWYQYFPLSLLQWRGHSLANSPWRKVRYVFGLFHLQFGLLWLFTPIQLL
FFNGISLNSFIANVIAVPLYSFVLVPLVLFAVVTQGVWHSWQLANDLAEKITALLTPWQDDWLAISIPHSLWITLCLTFL
FLVALYVIYKPPKPITSTLALSRQHRFKEFHFNPERALSLPLRKSAYCVGGGLIALCCLTLISQSISRPNWQLETLDVGQ
GLATLIVKDGKGVLYDTGPSWKGGSMAQLEILPYLQRQGIDLEWLILSHDDNDHAGGAKDILAMYPHIQLTTASQKRYGS
QNTEKNDRTFCQAGKQWHWQGLHFTVLSSENIVPRAENRDSCTLLLTDGTHHILLTGDADLSVEYKILPKLGKIHVLQVG
HHGSKTSTGQALVQHIQPDIALISSGRWNPWHFPHKDVVVRLQQQGSQIYNTAHSGQISLLFYNDEIKIQTARAEFSPWY
RRLIGLSTK

Nucleotide


Download         Length: 2430 bp        

>NTDB_id=189126 BBH51_RS03045 WP_005553347.1 615100..617529(+) (rec2) [Aggregatibacter actinomycetemcomitans strain IDH781]
GTGAGCGTTTCGTTGGATAAGTTGGCTATAGCCCTGATTTTTAGCGGTTTAACATTATTGTTTTTGCCCGATCGCTTTTT
ATTATCGTGGCAAACGGCGTGCTATTTACTCCTCTTATTATGTCCACTCATGTTGCTTGCTTATGCCCTGCGACAGGACA
AAATCAAGCAAATAGTAATGTGGCTACTGATCTTGATGATTCAGTCCGCTTACGTCCACCAATCGGCAATTTCCATACTG
ACCCAGGCGGATAATCTTGCCAATCTGCCGAAAACCGTTCAGCGCGAATTTACCGTCGAAGAAATTCTGCATCAGCAGCA
TTATCAAACCCTGGTTATTCGCGCCAAACTCGCCGAAAATCTTCCCGAACAACGTATTTACGCGCAATGGAAACTCAAGC
AACCAGTCAACCCCGGCGAACGTTACGCAGGCAATTTACGCTTGCGAGCGCTTTCTTCCCGCCTGAATTTTGACGGTTTT
GACCGCCAGCCATGGTATTTCGGCCAGCACATCACCGCTTGGGCAGAGATTAAAAGTGCGGTCAAATTGGAAAACGTTTT
TTCGTTACGCCAAACCGCTCTCAATCAAGCCTTACAACAAACGGAGAATTTACCCCGACAAGGCTTGTTGCTGGCACTCG
GTTTTGGCGAACGTTTCCGCTTAGACCAAAAAACTTGGCAAATTTATCAAAAAACAAATACGGCGCATTTAATTGCTATT
TCAGGGCTGCATATCGGACTGGCGATGATGCTGGGTTTTACCTTGGCGCGTCTACTGCAATTTGCCTTGCCGACGCGTTA
CATCAGCCCGACATTTCCGATTCTGTGCGGATTCATTTTTGCGCTGTTATACAGCCAACTGGCGGGGCTTGCTATTCCGA
CTTTACGCGCCATGATTGCGTTAGCCATGCTCTACGCGATTCAGTATTGGCGACGATATTGGACGGTATGGCAATTCTTG
TTAAGAGTGATTGCCTTGCTGATTTTTATCGATCCGCTCATGTTGCTTTCCACCAGCTTTTGGTTGTCAGTGGGCGCAGT
GACCTGTCTGATTGTTTGGTATCAGTATTTTCCGTTGTCTCTATTGCAATGGCGCGGCCATTCCCTTGCCAATTCGCCAT
GGCGGAAAGTGCGGTATGTTTTCGGCTTGTTTCATTTGCAATTCGGTCTGCTCTGGCTGTTCACGCCCATTCAGCTGTTG
TTTTTTAACGGCATTTCGTTAAATAGTTTTATCGCCAATGTCATCGCCGTGCCGCTTTATAGCTTCGTTTTGGTCCCGTT
GGTGTTATTTGCCGTAGTCACCCAAGGTGTGTGGCATTCGTGGCAGCTCGCCAACGATTTGGCAGAAAAAATCACCGCAC
TTTTGACGCCTTGGCAGGATGACTGGTTGGCAATTTCCATTCCGCACAGTTTATGGATAACCCTATGTTTAACCTTTCTT
TTTTTAGTGGCGCTCTATGTTATTTATAAACCGCCCAAACCGATAACATCCACTTTAGCCTTGTCAAGGCAGCACCGCTT
TAAAGAATTTCATTTTAATCCGGAACGCGCCTTAAGTTTACCGTTACGAAAAAGCGCTTATTGCGTGGGCGGTGGGCTGA
TTGCCCTGTGTTGCCTGACGTTAATTTCTCAGTCTATTTCACGTCCGAACTGGCAATTGGAAACCTTGGACGTGGGGCAA
GGGTTGGCAACTTTAATCGTGAAAGACGGCAAAGGCGTGCTTTACGATACCGGCCCGAGTTGGAAGGGCGGCAGTATGGC
ACAATTGGAAATTCTGCCTTATTTACAACGGCAAGGCATTGATTTGGAATGGCTGATATTAAGCCATGACGACAACGATC
ACGCAGGTGGTGCCAAAGATATCTTAGCAATGTATCCCCATATTCAGCTGACCACCGCTTCACAAAAGCGATATGGTTCC
CAAAACACCGAAAAAAATGACCGCACTTTTTGTCAAGCCGGTAAACAATGGCATTGGCAGGGGTTGCATTTTACCGTGCT
ATCATCGGAGAATATCGTGCCCCGTGCGGAAAATCGGGATTCCTGCACGCTTTTATTAACCGATGGCACGCACCATATTT
TGCTGACGGGCGATGCGGATCTTAGCGTGGAATATAAGATCCTGCCGAAACTTGGCAAAATCCATGTGTTACAAGTGGGG
CATCACGGTAGCAAAACCTCGACGGGGCAGGCATTAGTGCAACATATTCAACCGGACATTGCGCTGATTTCCAGCGGACG
CTGGAACCCATGGCATTTTCCCCATAAAGACGTGGTGGTGCGTCTGCAACAACAAGGATCGCAAATTTATAATACGGCGC
ATAGCGGGCAAATCAGTCTATTGTTCTACAATGATGAGATCAAAATTCAGACTGCGCGCGCTGAATTTTCGCCTTGGTAT
CGCAGATTGATTGGCTTGAGCACGAAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-486)

Metallo-beta-lactamase superfamily (Lactamase_B)

(557-745)

Domain of unknown function (DUF4131) (DUF4131)

(34-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

52.469

100

0.525

Multiple sequence alignment