Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I858_RS08690 Genome accession   NZ_CP016540
Coordinates   1701947..1703644 (-) Length   565 a.a.
NCBI ID   WP_065524727.1    Uniprot ID   A0A1B1S5B7
Organism   Planococcus versutus strain L10.15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1696947..1708644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I858_RS08670 (I858_015425) - 1697383..1699428 (-) 2046 WP_065524731.1 sigma-54 interaction domain-containing protein -
  I858_RS08675 (I858_015420) - 1699552..1699785 (+) 234 WP_065524730.1 DUF2627 domain-containing protein -
  I858_RS08680 (I858_015415) - 1699796..1700521 (-) 726 WP_083553688.1 glycerophosphodiester phosphodiesterase -
  I858_RS17525 - 1700767..1700898 (-) 132 WP_275425611.1 hypothetical protein -
  I858_RS08685 (I858_015410) spo0A 1701128..1701901 (-) 774 WP_065524728.1 sporulation transcription factor Spo0A -
  I858_RS08690 (I858_015405) recN 1701947..1703644 (-) 1698 WP_065524727.1 DNA repair protein RecN Machinery gene
  I858_RS08695 (I858_015400) ahrC 1703661..1704110 (-) 450 WP_058385497.1 transcriptional regulator AhrC/ArgR -
  I858_RS08700 (I858_015395) - 1704289..1705110 (-) 822 WP_065524726.1 TlyA family RNA methyltransferase -
  I858_RS08705 (I858_015390) dxs 1705107..1707011 (-) 1905 WP_065524935.1 1-deoxy-D-xylulose-5-phosphate synthase -
  I858_RS08710 (I858_015385) - 1707104..1707985 (-) 882 WP_065524725.1 polyprenyl synthetase family protein -
  I858_RS08715 (I858_015380) xseB 1707982..1708218 (-) 237 WP_065524724.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63580.24 Da        Isoelectric Point: 4.9487

>NTDB_id=189032 I858_RS08690 WP_065524727.1 1701947..1703644(-) (recN) [Planococcus versutus strain L10.15]
MLRELDIRNFAIIEALTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAKKAEIEGLFSLDDEQHPVFRK
LDEFGVTKSDGDILLRRELNDKGKNVCRINGKLVTISILREVGASLIDIHGQHETQELMDEKQHLYLLDQYAGKSLAKSK
ESYSHTFDKYTKLKREFSSYTENEQQIAQRIDLLTFQLQEIEAAELVIGEEEELVQERKKLQNFNKIYESISTAHEAIQG
ETKGLDWIGSAMSELEHAASVDESFSSSSETLSSAFYLIQDTGSEIKRILDDMEFDPARLNDIEQRLAVIQSLKRKYGSS
VEDILLYHEKQADDLDKLVNRDQRYQLDQEKLKELTEDLRIEAEELTILRKKAAKNLGKAIMEQLKELHMAKASFEVNFL
ILPNGRFDRYGHDSITFYISTNLGEPLKPLTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAISIDSQVLCISHLPQVAAMADQHLFIEKKVDKQRTTTAVTELDGSERTEEMSRMLSGAEITELTLQHAEELLSLAADR
KLLMK

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=189032 I858_RS08690 WP_065524727.1 1701947..1703644(-) (recN) [Planococcus versutus strain L10.15]
ATGCTTCGGGAATTAGATATACGTAATTTCGCCATTATTGAAGCGTTAACCGTCAGTTTTTCAGAAGGGTTAACGGTCTT
AACTGGAGAAACTGGTGCTGGTAAGTCCATTATTATCGATGCGGTTCATCTTTTGGCAGGCGGACGAGGAAGCCAAGAAT
TTATTCGACATGGTGCTAAAAAAGCGGAAATCGAAGGATTATTTTCGTTAGATGACGAGCAGCATCCGGTATTTCGTAAA
TTAGATGAATTTGGCGTTACTAAAAGTGATGGCGATATCTTGTTGCGTAGAGAGCTAAACGACAAAGGTAAAAATGTATG
TCGCATCAATGGTAAATTAGTGACCATTTCTATTTTGCGTGAAGTCGGCGCTTCATTAATTGATATTCATGGTCAACATG
AAACTCAAGAATTGATGGATGAAAAACAACACCTTTATTTACTTGACCAATATGCAGGAAAAAGTTTGGCTAAATCAAAA
GAAAGTTATAGTCATACATTCGATAAATACACAAAATTAAAACGTGAGTTTTCTTCATATACAGAAAATGAACAACAAAT
TGCCCAGCGCATTGATTTATTAACGTTTCAGTTGCAAGAAATTGAAGCAGCAGAACTCGTTATTGGAGAAGAAGAAGAAC
TTGTGCAAGAGCGAAAAAAGCTACAAAACTTTAATAAGATTTATGAATCAATTTCAACGGCGCATGAAGCAATTCAAGGA
GAAACAAAGGGCTTGGACTGGATAGGTTCCGCAATGTCTGAACTTGAACACGCCGCATCTGTTGATGAAAGCTTTAGTAG
TTCTTCTGAAACGTTGTCGAGTGCATTTTATTTAATTCAAGATACAGGATCTGAAATCAAACGAATTTTAGATGATATGG
AATTTGATCCAGCTAGACTAAATGATATCGAACAACGGTTGGCTGTTATTCAGTCTTTGAAAAGAAAATATGGCTCTTCG
GTGGAAGATATTTTGCTTTACCATGAAAAACAAGCAGATGATCTCGATAAATTGGTCAATCGGGATCAACGTTATCAATT
AGATCAAGAAAAATTAAAAGAACTGACTGAAGATTTACGAATAGAGGCAGAAGAACTAACCATTCTTCGTAAAAAAGCGG
CGAAAAATTTAGGCAAAGCCATTATGGAGCAGTTGAAAGAATTGCACATGGCAAAAGCATCTTTCGAAGTAAACTTTTTG
ATCTTGCCAAATGGACGGTTTGATCGATATGGCCATGATTCGATTACGTTTTATATTTCGACAAATCTGGGCGAACCATT
AAAACCTTTAACAAAAGTAGCCTCGGGTGGAGAATTATCTCGTATGATGTTGGCACTAAAAACTATTTTTTCTAAACATC
AAGGCATTACCTCTATTATTTTTGACGAAGTGGATACAGGTGTTAGTGGACGGGTAGCTCAAGCGATTGCTGAAAAAATT
GCAGCGATTTCAATAGATTCACAAGTCTTATGCATTTCACATTTGCCTCAAGTGGCGGCAATGGCAGATCAGCATTTATT
CATTGAGAAAAAAGTAGACAAGCAGCGTACGACAACTGCAGTAACGGAACTCGATGGATCTGAGCGTACAGAAGAAATGA
GTCGAATGCTATCAGGAGCCGAAATAACAGAGTTAACATTACAACATGCAGAAGAACTATTATCGCTCGCAGCAGATCGA
AAATTATTGATGAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1S5B7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.93

100

0.524

Multiple sequence alignment