Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   B7R57_RS08585 Genome accession   NZ_CP020656
Coordinates   1646923..1648035 (+) Length   370 a.a.
NCBI ID   WP_104930243.1    Uniprot ID   -
Organism   Staphylococcus aureus strain K5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1641923..1653035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7R57_RS08560 (B7R57_08585) rnpA 1642186..1642539 (-) 354 WP_001789343.1 ribonuclease P protein component -
  B7R57_RS08565 (B7R57_08590) rpmH 1642660..1642797 (-) 138 WP_000240855.1 50S ribosomal protein L34 -
  B7R57_RS08570 (B7R57_08595) dnaA 1643528..1644889 (+) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  B7R57_RS08575 (B7R57_08600) dnaN 1645167..1646300 (+) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  B7R57_RS08580 (B7R57_08605) yaaA 1646681..1646926 (+) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  B7R57_RS08585 (B7R57_08610) recF 1646923..1648035 (+) 1113 WP_104930243.1 DNA replication/repair protein RecF Machinery gene
  B7R57_RS08590 (B7R57_08615) gyrB 1648045..1649979 (+) 1935 WP_031588484.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  B7R57_RS08595 (B7R57_08620) gyrA 1650016..1652679 (+) 2664 WP_000819084.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42357.39 Da        Isoelectric Point: 6.5805

>NTDB_id=188958 B7R57_RS08585 WP_104930243.1 1646923..1648035(+) (recF) [Staphylococcus aureus strain K5]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNGLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=188958 B7R57_RS08585 WP_104930243.1 1646923..1648035(+) (recF) [Staphylococcus aureus strain K5]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGGTTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.378

100

0.584
  recF Streptococcus pneumoniae R6

49.062

100

0.495