Detailed information NTG0188760

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: BSR25_RS07790
• Genome accession: NZ_CP020604
• Coordinates: 1549332..1550408 (+)
• Length: 358 a.a.
• NCBI ID: WP_010906242.1
• Uniprot ID: Q9CE70
• Organism: Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1544332..1555408

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSR25_RS07765 (BSR25_1534)	pgsA	1544492..1545064 (-)	573	WP_010906238.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
BSR25_RS07770 (BSR25_1535)	-	1545105..1546001 (-)	897	WP_010906239.1	helix-turn-helix domain-containing protein	-
BSR25_RS07775 (BSR25_1536)	yfmH	1546213..1547496 (-)	1284	WP_004254752.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
BSR25_RS07780 (BSR25_1537)	yfmF	1547486..1548772 (-)	1287	WP_021214872.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
BSR25_RS07785 (BSR25_1538)	yaaA	1548970..1549332 (+)	363	WP_004254746.1	S4 domain-containing protein YaaA	-
BSR25_RS07790 (BSR25_1539)	recF	1549332..1550408 (+)	1077	WP_010906242.1	DNA replication/repair protein RecF	Machinery gene
BSR25_RS07795 (BSR25_1540)	-	1550495..1550863 (-)	369	WP_004254740.1	carboxymuconolactone decarboxylase family protein	-
BSR25_RS07800 (BSR25_1541)	-	1550941..1551318 (+)	378	WP_010906243.1	MerR family transcriptional regulator	-
BSR25_RS07805 (BSR25_1542)	-	1551331..1552276 (-)	946	Protein_1515	alpha/beta hydrolase	-
BSR25_RS07810 (BSR25_1543)	galE	1552399..1553379 (-)	981	WP_010906245.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41356.23 Da
• Isoelectric Point: 6.8652

>NTDB_id=188760 BSR25_RS07790 WP_010906242.1 1549332..1550408(+) (recF) [Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=188760 BSR25_RS07790 WP_010906242.1 1549332..1550408(+) (recF) [Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCACCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGACAAAGAGCTCATTTCTTGGTCACAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTAGTCAAAGGTTCTCCAGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

3D structure

• AlphaFold DB: Q9CE70

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55	100	0.553
recF	Bacillus subtilis subsp. subtilis str. 168	45.977	97.207	0.447