Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AWQ24_RS02230 Genome accession   NZ_CP016483
Coordinates   466606..467652 (-) Length   348 a.a.
NCBI ID   WP_030007051.1    Uniprot ID   A0AAN0YJM6
Organism   Picosynechococcus sp. PCC 8807     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 461606..472652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWQ24_RS02215 (AWQ24_02215) hetR 463020..463964 (-) 945 WP_232318855.1 heterocyst differentiation master regulator HetR -
  AWQ24_RS02220 (AWQ24_02220) - 464209..465333 (-) 1125 WP_065715884.1 aldo/keto reductase -
  AWQ24_RS02225 (AWQ24_02225) - 465357..466427 (-) 1071 WP_232318856.1 tetratricopeptide repeat protein -
  AWQ24_RS02230 (AWQ24_02230) recA 466606..467652 (-) 1047 WP_030007051.1 recombinase RecA Machinery gene
  AWQ24_RS02235 (AWQ24_02235) ribBA 467821..469485 (-) 1665 WP_065715886.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  AWQ24_RS02240 (AWQ24_02240) - 469564..471225 (-) 1662 WP_065715887.1 ATP-binding protein -
  AWQ24_RS02245 (AWQ24_02245) - 471438..471668 (-) 231 WP_030007054.1 hypothetical protein -
  AWQ24_RS02250 (AWQ24_02250) speD 472040..472423 (-) 384 WP_041443332.1 adenosylmethionine decarboxylase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37315.62 Da        Isoelectric Point: 5.3082

>NTDB_id=188531 AWQ24_RS02230 WP_030007051.1 466606..467652(-) (recA) [Picosynechococcus sp. PCC 8807]
MSAITNNPDKEKALNLVLNQIERNFGKGAIMRLGDAAQMKVETIPSGALTLDQAMGGGFPRGRIVEIYGPESSGKTTVAL
HAIAEVQKAGGVAAFIDAEHALDPTYSAALGVDIENLLVAQPDNGESALEIADQLVRSAAVDLIVIDSVAALVPRAEIEG
EMGDVQVGLQARLMSKALRKIAGNMGRSGCTVIFLNQLRQKIGISYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGSEG
EFGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISRVGCMLDLAEQTGVITRKGAWYSYEGDNIAQGRDNAVKYLEENPDVA
AIVTQKVRENLDMSSMGFGDEHHTTEEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=188531 AWQ24_RS02230 WP_030007051.1 466606..467652(-) (recA) [Picosynechococcus sp. PCC 8807]
ATGTCAGCCATCACCAATAATCCCGACAAAGAAAAAGCCCTAAACCTAGTACTCAACCAAATCGAGCGCAACTTCGGTAA
AGGGGCAATTATGCGGTTGGGGGATGCCGCCCAGATGAAGGTCGAAACAATCCCCAGTGGGGCTTTGACCCTAGATCAGG
CGATGGGGGGTGGGTTCCCACGTGGGCGAATTGTGGAAATCTACGGCCCGGAGAGTTCTGGGAAAACGACGGTTGCTCTC
CATGCGATCGCCGAAGTCCAAAAAGCGGGTGGCGTCGCTGCTTTTATTGACGCTGAACATGCCCTGGATCCCACCTATTC
CGCGGCCTTGGGAGTTGATATTGAAAACCTGCTGGTGGCCCAACCCGATAACGGCGAATCTGCTTTAGAAATTGCCGACC
AATTGGTTCGCTCGGCGGCTGTGGATCTAATCGTGATTGACTCGGTGGCGGCCCTTGTGCCCAGGGCAGAGATCGAAGGA
GAAATGGGCGATGTGCAGGTGGGTCTCCAGGCCCGTCTCATGAGTAAAGCCCTCCGTAAAATTGCCGGGAATATGGGGCG
TTCGGGTTGTACAGTAATCTTCCTCAATCAATTGCGCCAAAAAATTGGCATCAGTTACGGTAATCCAGAGGTGACGACTG
GCGGGACAGCCCTCAAATTCTATGCTTCCGTGCGCCTCGATATCCGACGCATCCAAACCCTCAAGAAAGGGAGCGAAGGG
GAATTTGGCATCCGCGCCAAGGTTAAGGTGGCCAAAAATAAAGTTGCCCCACCGTTCCGCATTGCCGAATTTGACATTAT
CTTTGGGAAAGGAATCTCTCGTGTGGGCTGTATGCTAGACCTCGCTGAACAAACGGGGGTTATTACCCGTAAAGGTGCCT
GGTACAGCTATGAAGGGGATAACATTGCCCAGGGTCGCGATAATGCAGTGAAGTATCTAGAGGAAAATCCGGACGTTGCG
GCGATCGTCACCCAAAAAGTTCGGGAAAATCTGGATATGAGTTCCATGGGTTTCGGGGATGAGCACCACACCACCGAAGA
GGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

61.877

97.989

0.606
  recA Acinetobacter baumannii D1279779

62.27

93.678

0.583
  recA Ralstonia pseudosolanacearum GMI1000

62.579

91.379

0.572
  recA Pseudomonas stutzeri DSM 10701

60

94.828

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

57.771

97.989

0.566
  recA Glaesserella parasuis strain SC1401

60.062

92.816

0.557
  recA Bacillus subtilis subsp. subtilis str. 168

58.485

94.828

0.555
  recA Helicobacter pylori strain NCTC11637

58.716

93.966

0.552
  recA Helicobacter pylori 26695

58.716

93.966

0.552
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.896

93.678

0.552
  recA Vibrio cholerae strain A1552

58.896

93.678

0.552
  recA Streptococcus mutans UA159

55.814

98.851

0.552
  recA Streptococcus pneumoniae TIGR4

55.523

98.851

0.549
  recA Streptococcus pneumoniae Rx1

55.523

98.851

0.549
  recA Streptococcus pneumoniae D39

55.523

98.851

0.549
  recA Streptococcus pneumoniae R6

55.523

98.851

0.549
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.394

98.563

0.546
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.402

95.115

0.546
  recA Lactococcus lactis subsp. cremoris KW2

58.025

93.103

0.54
  recA Streptococcus mitis SK321

58.025

93.103

0.54
  recA Neisseria gonorrhoeae MS11

58.385

92.529

0.54
  recA Neisseria gonorrhoeae MS11

58.385

92.529

0.54
  recA Neisseria gonorrhoeae strain FA1090

58.385

92.529

0.54
  recA Streptococcus mitis NCTC 12261

57.407

93.103

0.534
  recA Streptococcus pyogenes NZ131

57.099

93.103

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.108

95.402

0.497

Multiple sequence alignment