Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AWQ22_RS09680 Genome accession   NZ_CP016477
Coordinates   2006563..2008125 (+) Length   520 a.a.
NCBI ID   WP_065710951.1    Uniprot ID   A0AAN0YIA3
Organism   Picosynechococcus sp. PCC 7117     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2001563..2013125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWQ22_RS09655 (AWQ22_09655) rpmF 2002280..2002447 (-) 168 WP_012307503.1 50S ribosomal protein L32 -
  AWQ22_RS09660 (AWQ22_09660) - 2002660..2003760 (+) 1101 WP_030006411.1 DUF389 domain-containing protein -
  AWQ22_RS09665 (AWQ22_09665) pstB 2004105..2004908 (+) 804 WP_012307505.1 phosphate ABC transporter ATP-binding protein PstB -
  AWQ22_RS09670 (AWQ22_09670) - 2005202..2005678 (+) 477 WP_012307506.1 FHA domain-containing protein -
  AWQ22_RS09675 (AWQ22_09675) - 2005735..2006529 (+) 795 WP_012307507.1 TIGR03943 family putative permease subunit -
  AWQ22_RS09680 (AWQ22_09680) comA 2006563..2008125 (+) 1563 WP_065710951.1 phospholipase D-like domain-containing protein Machinery gene
  AWQ22_RS09685 (AWQ22_09685) - 2008181..2008969 (+) 789 WP_065710952.1 tetratricopeptide repeat protein -
  AWQ22_RS09690 (AWQ22_09690) recQ 2008981..2011119 (-) 2139 WP_065710953.1 DNA helicase RecQ -
  AWQ22_RS09695 (AWQ22_09695) - 2011142..2011777 (-) 636 WP_065710954.1 exopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 56801.83 Da        Isoelectric Point: 4.6096

>NTDB_id=188528 AWQ22_RS09680 WP_065710951.1 2006563..2008125(+) (comA) [Picosynechococcus sp. PCC 7117]
MVNPAARRPFFAFWGLLAVGLLGCQGGRGRSPQDESIQVYFNQRQGRRISYTEPYRQLKRPGDNLEAILIEGINSAQSTI
DIAIQELNLPLVAEALADQAAAGITIRVIVENNYRQPWAEPDSTEILELDERDQGKYQEFVALADENQDGFLDAAETAKY
DAIAILERAKIPILDDTADGSKGSGLMHHKFMVVDGETVITGSANWTLSGIHGDFANLETRGNANHLMRIQDAAIAQVFT
TEFEEMWTGRKFGVQKLQEPPQTFSVGNSRVTVQFSPFSSSQPWENTSNGLIGSTLAQAQESISLALFVFSEQKIANILE
KEAQAGTAIRALIDPSFAFREYSDGLDLLGVNLKEKCDPFNRPWANPIQTVGTPKLPKGDKFHHKFAVIDGKTVITGSHN
WSAAANNQNDETLLIIQNEAIAQQFQAEFDQFYTTAYLGIPPFIASKQKTIPTDCTVAATDGPVNLNTASAIELETLPGI
GPSLAQGIIEGRPYSGLTDLQRVSGIGEKKAADLAGKVTW

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=188528 AWQ22_RS09680 WP_065710951.1 2006563..2008125(+) (comA) [Picosynechococcus sp. PCC 7117]
ATGGTTAATCCCGCCGCTCGCCGCCCATTTTTCGCTTTTTGGGGTCTGTTGGCCGTTGGTCTGCTGGGTTGCCAGGGGGG
AAGGGGGCGATCGCCCCAGGATGAATCCATTCAGGTGTATTTCAATCAGCGTCAAGGCCGACGTATTAGTTACACCGAAC
CCTACCGCCAACTGAAACGCCCAGGGGATAACCTCGAAGCTATTCTAATCGAGGGCATTAACAGTGCCCAAAGCACCATT
GATATTGCGATTCAGGAGTTGAACTTGCCCCTGGTAGCTGAAGCTCTGGCCGACCAAGCCGCTGCGGGAATCACAATTCG
CGTCATCGTCGAAAATAATTACCGTCAACCCTGGGCCGAACCTGATTCGACAGAAATTTTAGAACTCGATGAACGGGATC
AGGGAAAATACCAAGAATTTGTCGCCCTCGCCGACGAAAACCAAGATGGCTTTTTGGATGCGGCAGAGACGGCTAAATAT
GATGCGATCGCCATTTTAGAACGGGCAAAGATTCCGATTTTAGACGACACCGCCGACGGTTCCAAAGGGAGCGGCCTGAT
GCACCACAAATTTATGGTGGTCGATGGGGAAACGGTGATCACCGGCTCAGCAAACTGGACATTAAGCGGCATCCACGGAG
ATTTCGCCAACCTGGAAACTAGGGGCAATGCAAATCACCTAATGCGGATCCAAGATGCGGCGATCGCCCAGGTTTTTACA
ACAGAATTTGAGGAGATGTGGACAGGGCGTAAGTTTGGAGTCCAGAAACTTCAGGAACCGCCCCAAACCTTTAGCGTGGG
CAACAGTCGCGTCACCGTTCAGTTTTCGCCTTTCTCTAGTTCCCAGCCCTGGGAAAATACGAGCAATGGTCTCATTGGCA
GCACCCTCGCCCAAGCCCAAGAGTCGATTAGCCTGGCCCTATTTGTTTTTTCTGAGCAAAAAATCGCCAATATTTTAGAA
AAAGAAGCCCAAGCGGGCACTGCAATCCGCGCCTTAATTGATCCGAGTTTTGCCTTTCGGGAATATAGCGATGGGCTGGA
TCTGTTGGGGGTGAATCTCAAGGAAAAATGTGACCCCTTTAATCGGCCTTGGGCTAACCCCATTCAAACCGTCGGCACGC
CCAAATTACCCAAGGGGGACAAATTTCACCACAAATTCGCTGTCATCGATGGCAAAACCGTGATTACCGGCTCCCACAAT
TGGTCAGCTGCTGCCAATAATCAAAACGACGAAACTCTCTTAATTATCCAGAACGAGGCGATCGCCCAACAATTTCAAGC
TGAATTCGATCAGTTTTATACCACGGCCTACCTAGGAATTCCGCCCTTTATCGCCAGCAAACAAAAAACCATCCCTACTG
ACTGTACCGTAGCCGCCACCGATGGCCCTGTGAACCTTAATACCGCCAGTGCCATCGAACTTGAAACCCTACCTGGCATT
GGCCCCAGCCTCGCCCAAGGGATTATCGAAGGCCGTCCCTACTCTGGTTTGACGGATCTGCAACGGGTGTCGGGCATTGG
GGAAAAGAAAGCCGCCGATCTGGCCGGAAAAGTCACTTGGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(463-519)

PLD-like domain (PLDc_2)

(69-247)

PLD-like domain (PLDc_2)

(295-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

47.978

100

0.502

Multiple sequence alignment