Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   A4W75_RS02875 Genome accession   NZ_CP016467
Coordinates   564529..565830 (+) Length   433 a.a.
NCBI ID   WP_253732803.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain TMW 1.27     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 559529..570830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W75_RS02835 (A4W75_02740) - 559879..560169 (+) 291 WP_004270748.1 YlbG family protein -
  A4W75_RS02840 (A4W75_02745) rsmD 560175..560729 (+) 555 WP_004270750.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  A4W75_RS02845 (A4W75_02750) coaD 560741..561235 (+) 495 WP_065825725.1 pantetheine-phosphate adenylyltransferase -
  A4W75_RS02850 (A4W75_02755) - 561237..562283 (+) 1047 WP_080563410.1 SepM family pheromone-processing serine protease -
  A4W75_RS02855 comEA 562360..562662 (+) 303 WP_253732798.1 hypothetical protein Machinery gene
  A4W75_RS02860 comEA 562659..563030 (+) 372 WP_253732800.1 helix-hairpin-helix domain-containing protein Machinery gene
  A4W75_RS02865 (A4W75_02765) - 563089..563577 (+) 489 WP_111447701.1 ComE operon protein 2 -
  A4W75_RS10990 - 564036..564568 (+) 533 Protein_567 ComEC/Rec2 family competence protein -
  A4W75_RS02875 comEC 564529..565830 (+) 1302 WP_253732803.1 ComEC/Rec2 family competence protein Machinery gene
  A4W75_RS02880 (A4W75_02775) holA 565831..566859 (+) 1029 WP_253732804.1 DNA polymerase III subunit delta -
  A4W75_RS02885 (A4W75_02780) rpsT 566914..567168 (-) 255 WP_004271117.1 30S ribosomal protein S20 -
  A4W75_RS02890 (A4W75_02785) rpsO 567445..567714 (+) 270 WP_004271112.1 30S ribosomal protein S15 -
  A4W75_RS02895 (A4W75_02790) - 567917..569635 (+) 1719 WP_056966011.1 ribonuclease J -
  A4W75_RS02900 (A4W75_02795) - 569718..570662 (+) 945 WP_056966010.1 hypothetical protein -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 48534.80 Da        Isoelectric Point: 9.5150

>NTDB_id=188445 A4W75_RS02875 WP_253732803.1 564529..565830(+) (comEC) [Latilactobacillus curvatus strain TMW 1.27]
MAAVFINQYGGLLSYLMAFGLIYQRRHGTFTTAFWLGLLSLPVCLRFNYRWHILTILINGIVAPIFLPVMLGLIMVAICL
WPVSHMIVWLEEGLLTTLYKGLAWIATFPYATITFGKIQLIPLFLIVIGTLWLMASTGRRAKWGWGAVISLYVISFIGIH
FNPVGRVIMFDIGQGDSLLIQQPFNRHNLLIDTGGRLALPQEKWQRRQIVSRAEKVTVNYLYSCGIDHLEAIALSHQDAD
HIGDLNEIMQHIRVKRLICAAGLPQNRQFQRQVRPHLTKVAIEPYLADQHFMIGHQQINVLAPVVAGPGGNADSLVLQTQ
IGGASWLFTGDLEKAGEVAIVDRYPQLRVDYLKVGHHGSQTASDPQSIATWQVKGALISAGRHNRYGHPHAATLQTLKRA
NVPFWNTADCGMLEWRYGFGQVPMIKTTLKDCD

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=188445 A4W75_RS02875 WP_253732803.1 564529..565830(+) (comEC) [Latilactobacillus curvatus strain TMW 1.27]
ATGGCAGCCGTATTTATTAATCAGTATGGGGGATTGCTGAGCTATCTGATGGCTTTTGGATTGATTTATCAGCGGCGCCA
TGGTACTTTTACAACGGCATTTTGGCTAGGCTTGTTAAGTTTACCGGTGTGCTTGCGGTTTAATTATCGTTGGCATATCT
TGACGATTTTGATTAATGGGATTGTCGCGCCGATTTTCTTACCAGTCATGTTGGGTTTGATTATGGTAGCGATTTGCTTA
TGGCCTGTTAGTCATATGATAGTTTGGTTAGAAGAAGGCCTGCTAACGACGCTGTATAAAGGATTAGCTTGGATTGCAAC
GTTCCCATATGCGACAATTACTTTCGGTAAAATCCAGCTAATACCACTCTTTTTAATTGTGATAGGCACACTATGGTTGA
TGGCAAGTACTGGTCGGCGAGCAAAGTGGGGCTGGGGGGCTGTTATCAGCCTGTATGTCATTAGTTTTATTGGTATCCAC
TTTAATCCGGTTGGCCGCGTGATTATGTTTGATATCGGGCAAGGCGATAGCCTGTTGATTCAACAACCCTTCAATCGACA
TAACCTGTTAATTGACACCGGCGGCCGACTAGCTTTACCGCAAGAAAAGTGGCAACGGCGGCAAATTGTGAGTCGGGCGG
AAAAAGTAACAGTTAATTACCTCTACAGCTGTGGCATTGATCATTTAGAGGCAATCGCATTATCGCATCAGGATGCTGAT
CATATAGGGGACTTAAATGAAATTATGCAACATATCCGAGTTAAACGGTTGATTTGTGCTGCGGGCTTACCGCAAAACCG
GCAGTTTCAACGGCAAGTGCGGCCGCATCTTACAAAAGTTGCAATTGAGCCTTATTTGGCGGACCAACATTTTATGATTG
GTCACCAACAAATCAATGTGTTAGCGCCAGTGGTGGCCGGACCAGGCGGGAATGCTGACTCACTCGTTTTGCAAACGCAA
ATTGGTGGTGCGAGTTGGTTATTTACTGGTGATTTAGAAAAAGCGGGTGAAGTGGCAATCGTTGATCGCTACCCACAATT
ACGCGTTGATTACCTAAAGGTGGGTCACCATGGCAGTCAAACGGCGAGTGATCCCCAGTCAATTGCGACGTGGCAGGTAA
AAGGGGCGTTGATTTCTGCGGGACGCCATAATCGTTATGGTCATCCACATGCCGCAACGTTGCAGACTTTAAAACGTGCG
AACGTCCCATTTTGGAATACGGCTGACTGTGGGATGCTGGAATGGCGCTATGGTTTTGGCCAAGTGCCAATGATTAAAAC
AACACTAAAGGATTGTGACTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(30-137)

Metallo-beta-lactamase superfamily (Lactamase_B)

(173-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

64.352

99.769

0.642

Multiple sequence alignment