Detailed information NTG0188256

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: BAY21_RS05615
• Genome accession: NZ_CP016439
• Coordinates: 1048152..1048580 (+)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain CS8
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1043152..1053580

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAY21_RS05595 (BAY21_05595)	-	1045503..1045865 (+)	363	WP_011226630.1	DUF1033 family protein	-
BAY21_RS05600 (BAY21_05600)	comGA/cglA/cilD	1045946..1046887 (+)	942	WP_011226629.1	competence type IV pilus ATPase ComGA	Machinery gene
BAY21_RS05605 (BAY21_05605)	comYB	1046769..1047869 (+)	1101	WP_148148889.1	competence type IV pilus assembly protein ComGB	Machinery gene
BAY21_RS05610 (BAY21_05610)	comYC	1047866..1048192 (+)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
BAY21_RS05615 (BAY21_05615)	comYD	1048152..1048580 (+)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
BAY21_RS05620 (BAY21_05620)	comGE	1048552..1048845 (+)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
BAY21_RS05625 (BAY21_05625)	comYF	1048829..1049266 (+)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
BAY21_RS05630 (BAY21_05630)	comGG	1049244..1049561 (+)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
BAY21_RS05635 (BAY21_05635)	comYH	1049606..1050562 (+)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
BAY21_RS05640 (BAY21_05640)	-	1050618..1051811 (+)	1194	WP_022096898.1	acetate kinase	-
BAY21_RS05645 (BAY21_05645)	-	1052060..1052257 (+)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
BAY21_RS11075 (BAY21_05650)	-	1052500..1052925 (+)	426	WP_041827107.1	CPBP family intramembrane glutamic endopeptidase	-
BAY21_RS05655 (BAY21_05655)	-	1052999..1053447 (+)	449	Protein_1055	CAAX protease	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=188256 BAY21_RS05615 WP_011226626.1 1048152..1048580(+) (comYD) [Streptococcus thermophilus strain CS8]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=188256 BAY21_RS05615 WP_011226626.1 1048152..1048580(+) (comYD) [Streptococcus thermophilus strain CS8]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38