Detailed information NTG0188166

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: VSVS05_RS12775
• Genome accession: NZ_CP016414
• Coordinates: 2807543..2808598 (-)
• Length: 351 a.a.
• NCBI ID: WP_257784174.1
• Uniprot ID: -
• Organism: Vibrio scophthalmi strain VS-05
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2802543..2813598

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VSVS05_RS12750 (VSVS05_02606)	-	2802758..2803546 (-)	789	Protein_2446	phosphomannomutase	-
VSVS05_RS12755 (VSVS05_02607)	-	2803562..2804974 (-)	1413	WP_065545807.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
VSVS05_RS12760 (VSVS05_02608)	-	2805018..2805488 (-)	471	WP_065545808.1	GDP-mannose mannosyl hydrolase	-
VSVS05_RS12765 (VSVS05_02609)	rfaH	2805806..2806324 (-)	519	WP_156785344.1	transcription/translation regulatory transformer protein RfaH	-
VSVS05_RS12770 (VSVS05_02610)	-	2806780..2807316 (-)	537	WP_065545810.1	SPOR domain-containing protein	-
VSVS05_RS12775 (VSVS05_02611)	cytR	2807543..2808598 (-)	1056	WP_257784174.1	DNA-binding transcriptional regulator CytR	Regulator
VSVS05_RS12780 (VSVS05_02612)	priA	2808838..2811039 (-)	2202	WP_065545811.1	primosomal protein N'	-
VSVS05_RS12785 (VSVS05_02613)	rpmE	2811358..2811576 (+)	219	WP_005593644.1	50S ribosomal protein L31	-
VSVS05_RS12790 (VSVS05_02614)	-	2811823..2813097 (+)	1275	WP_065545812.1	malic enzyme-like NAD(P)-binding protein	-
VSVS05_RS12795 (VSVS05_02615)	metJ	2813254..2813572 (-)	319	Protein_2455	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 38805.85 Da
• Isoelectric Point: 7.6849

>NTDB_id=188166 VSVS05_RS12775 WP_257784174.1 2807543..2808598(-) (cytR) [Vibrio scophthalmi strain VS-05]
MAKALPPKELTKRVTFMATMKDVAQLAGVSTATVSRALMNPEKVSSATRKRVEDAVLEAGYSPNSLARNLRRNESKTIIA
IIPDICDPYYTEIIRGIEDAAMEHGYIVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMA
CEFAPELELPTVHIDNLTSAFEVVNYLTQLGHKRIAQISGPETATLCQFRQQGYQQALRRAGITMNPTYSTFGEFTFEAG
AKAVRQLLALPEPPTAIFCHNDAMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMML
ELLRGHDVRAGSRLLETQLVVRKSAAPPRAL

Nucleotide

• Length: 1056 bp

>NTDB_id=188166 VSVS05_RS12775 WP_257784174.1 2807543..2808598(-) (cytR) [Vibrio scophthalmi strain VS-05]
GTGGCCAAGGCGCTACCGCCAAAGGAACTAACTAAGAGGGTTACATTTATGGCGACAATGAAGGATGTTGCCCAGCTCGC
GGGAGTTTCAACAGCGACGGTATCGAGGGCGCTGATGAATCCTGAAAAAGTCTCTTCTGCCACGCGTAAGCGCGTTGAAG
ACGCTGTGTTAGAAGCTGGCTATTCCCCAAATTCTTTAGCGCGTAATTTACGCCGCAACGAATCGAAAACGATCATCGCG
ATCATTCCTGATATCTGCGATCCTTATTACACGGAGATCATTCGTGGTATTGAAGATGCAGCCATGGAGCATGGTTATAT
TGTTCTGTTAGGCGATAGCGGTCAGCAGAAAAGACGTGAAAATTCCTTTGTGAATTTGGTCTTTACTAAGCAAGCTGACG
GCATGTTGCTGCTTGGTACTGATCTGCCGTTTGATGTCAGCAAACCTGAGCAGAAAAACCTACCGCCAATGGTTATGGCG
TGTGAGTTTGCCCCTGAGCTTGAACTGCCAACGGTTCACATTGATAACCTGACCTCTGCGTTTGAAGTGGTCAACTATCT
TACTCAGCTTGGTCATAAGCGCATCGCACAAATTTCCGGGCCAGAAACGGCGACTCTGTGTCAATTCCGTCAGCAAGGCT
ATCAACAAGCATTGCGCCGCGCGGGCATTACCATGAACCCGACTTACAGCACATTTGGTGAGTTCACTTTTGAGGCGGGT
GCCAAAGCGGTCAGACAATTACTAGCACTGCCTGAGCCACCGACGGCGATTTTCTGTCATAACGATGCGATGGCGATTGG
TGCTATTCAAGAAGCAAAACGTCTTGGTTTACGGGTACCACAAGATTTATCGGTAGTGGGTTTTGATGACATTCAGTTCG
CTCAATATTGCGATCCACCGCTGACCACCATCTCACAGCCTCGTTATGAGATTGGCCGTCAAGCCATGCTGATGATGCTA
GAGTTGCTGCGTGGTCATGATGTCCGTGCGGGGTCGCGTCTATTAGAAACGCAATTAGTGGTACGTAAGAGTGCTGCGCC
ACCAAGAGCTCTCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (19-64)

• Periplasmic binding protein-like domain (Peripla_BP_3) (184-344)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	94.578	94.587	0.895
cytR	Vibrio parahaemolyticus RIMD 2210633	89.053	96.296	0.858