Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | VSVS05_RS11360 | Genome accession | NZ_CP016414 |
| Coordinates | 2516419..2517033 (+) | Length | 204 a.a. |
| NCBI ID | WP_005593191.1 | Uniprot ID | H6URH3 |
| Organism | Vibrio scophthalmi strain VS-05 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2511419..2522033
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VSVS05_RS11340 (VSVS05_02321) | - | 2511670..2512593 (-) | 924 | WP_065545701.1 | ABC transporter ATP-binding protein | - |
| VSVS05_RS11345 (VSVS05_02322) | - | 2512794..2514467 (-) | 1674 | WP_005593194.1 | SulP family inorganic anion transporter | - |
| VSVS05_RS11350 (VSVS05_02323) | can | 2514713..2515381 (+) | 669 | WP_005593193.1 | carbonate dehydratase | - |
| VSVS05_RS11355 (VSVS05_02324) | hpt | 2515481..2516011 (-) | 531 | WP_005593192.1 | hypoxanthine phosphoribosyltransferase | - |
| VSVS05_RS11360 (VSVS05_02325) | opaR | 2516419..2517033 (+) | 615 | WP_005593191.1 | LuxR/HapR/OpaR family quorum-sensing transcriptional regulator | Regulator |
| VSVS05_RS11365 (VSVS05_02326) | lpdA | 2517133..2518563 (-) | 1431 | WP_005593190.1 | dihydrolipoyl dehydrogenase | - |
| VSVS05_RS11370 (VSVS05_02327) | aceF | 2518847..2520736 (-) | 1890 | WP_065545702.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
Sequence
Protein
Download Length: 204 a.a. Molecular weight: 23500.78 Da Isoelectric Point: 5.5969
>NTDB_id=188159 VSVS05_RS11360 WP_005593191.1 2516419..2517033(+) (opaR) [Vibrio scophthalmi strain VS-05]
MDSIAKRPRTRLSPKKRKQQLMDISLDVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDLHAKQNLANLTSEMVNLIAEDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAMERGEVCNDHDPA
DLATLFHGICYSLFVQANRHTDEQAMLKLADSYLNMLCIYKEEA
MDSIAKRPRTRLSPKKRKQQLMDISLDVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDLHAKQNLANLTSEMVNLIAEDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAMERGEVCNDHDPA
DLATLFHGICYSLFVQANRHTDEQAMLKLADSYLNMLCIYKEEA
Nucleotide
Download Length: 615 bp
>NTDB_id=188159 VSVS05_RS11360 WP_005593191.1 2516419..2517033(+) (opaR) [Vibrio scophthalmi strain VS-05]
ATGGACTCTATAGCAAAAAGACCCCGCACCCGACTCTCGCCCAAAAAACGTAAGCAACAGCTGATGGATATTTCTCTGGA
TGTATTTGCGCGCCGTGGGATTGGTCGTGGTGGTCATGCCGATATTGCGGAAATTGCACAAGTATCGGTCGCAACGGTAT
TCAACTACTTCCCAACACGTGAAGACTTAGTCGATGATGTATTGAACTATGTGGTACGTCAGTTCTCTAATTTTCTTTCA
GACAATATCGACCTAGATTTACACGCCAAACAGAACCTCGCGAATTTGACATCAGAGATGGTTAATCTCATCGCTGAAGA
TTGTCATTGGCTTAAAGTGTGGTTTGAGTGGAGCGCGTCAACCCGTGATGAAGTCTGGCCACTGTTTGTTAGCACCAACC
GAACTAACCAGTTATTAGTGCAAAACATGTTTATCAAAGCGATGGAGCGCGGCGAAGTGTGTAACGATCATGATCCTGCT
GATCTTGCAACGCTATTCCACGGCATTTGTTATTCACTGTTTGTGCAAGCTAACCGCCACACCGATGAACAAGCGATGTT
GAAACTAGCGGACAGCTATCTAAACATGTTGTGTATTTATAAAGAAGAAGCGTAA
ATGGACTCTATAGCAAAAAGACCCCGCACCCGACTCTCGCCCAAAAAACGTAAGCAACAGCTGATGGATATTTCTCTGGA
TGTATTTGCGCGCCGTGGGATTGGTCGTGGTGGTCATGCCGATATTGCGGAAATTGCACAAGTATCGGTCGCAACGGTAT
TCAACTACTTCCCAACACGTGAAGACTTAGTCGATGATGTATTGAACTATGTGGTACGTCAGTTCTCTAATTTTCTTTCA
GACAATATCGACCTAGATTTACACGCCAAACAGAACCTCGCGAATTTGACATCAGAGATGGTTAATCTCATCGCTGAAGA
TTGTCATTGGCTTAAAGTGTGGTTTGAGTGGAGCGCGTCAACCCGTGATGAAGTCTGGCCACTGTTTGTTAGCACCAACC
GAACTAACCAGTTATTAGTGCAAAACATGTTTATCAAAGCGATGGAGCGCGGCGAAGTGTGTAACGATCATGATCCTGCT
GATCTTGCAACGCTATTCCACGGCATTTGTTATTCACTGTTTGTGCAAGCTAACCGCCACACCGATGAACAAGCGATGTT
GAAACTAGCGGACAGCTATCTAAACATGTTGTGTATTTATAAAGAAGAAGCGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
80.788 |
99.51 |
0.804 |
| hapR | Vibrio cholerae C6706 |
77.889 |
97.549 |
0.76 |
| hapR | Vibrio cholerae strain A1552 |
77.889 |
97.549 |
0.76 |