Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   BBJ33_RS17890 Genome accession   NZ_CP016395
Coordinates   3667649..3667768 (+) Length   39 a.a.
NCBI ID   WP_069473622.1    Uniprot ID   -
Organism   Bacillus velezensis strain M75     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3662649..3672768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBJ33_RS17870 (BBJ33_17870) - 3663005..3663511 (+) 507 Protein_3537 AlbG -
  BBJ33_RS17875 (BBJ33_17875) - 3663518..3664894 (-) 1377 WP_069473620.1 YncE family protein -
  BBJ33_RS17880 (BBJ33_17880) - 3664934..3666289 (-) 1356 WP_069473621.1 YncE family protein -
  BBJ33_RS17885 (BBJ33_17885) rapF 3666520..3667665 (+) 1146 WP_079890910.1 tetratricopeptide repeat protein Regulator
  BBJ33_RS17890 (BBJ33_17890) phrF 3667649..3667768 (+) 120 WP_069473622.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BBJ33_RS17895 (BBJ33_17895) - 3667967..3668170 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  BBJ33_RS17900 (BBJ33_17900) - 3668184..3668387 (+) 204 WP_069473623.1 hypothetical protein -
  BBJ33_RS20725 (BBJ33_17905) - 3668422..3668608 (+) 187 Protein_3544 DUF4177 domain-containing protein -
  BBJ33_RS17910 (BBJ33_17910) - 3668796..3669077 (+) 282 WP_014306021.1 hypothetical protein -
  BBJ33_RS17915 (BBJ33_17915) - 3669121..3669633 (+) 513 WP_069473625.1 stage II sporulation protein M -
  BBJ33_RS17925 (BBJ33_17925) - 3670224..3670442 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  BBJ33_RS17930 (BBJ33_17930) speB 3670612..3671484 (-) 873 WP_003151054.1 agmatinase -
  BBJ33_RS17935 (BBJ33_17935) speE 3671544..3672374 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4282.10 Da        Isoelectric Point: 8.0195

>NTDB_id=187945 BBJ33_RS17890 WP_069473622.1 3667649..3667768(+) (phrF) [Bacillus velezensis strain M75]
MKLKYKLALTCLAVSTVFVSADIASAPEHQFEIAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=187945 BBJ33_RS17890 WP_069473622.1 3667649..3667768(+) (phrF) [Bacillus velezensis strain M75]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAGTAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAATTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

70.37

69.231

0.487
  phrC Bacillus subtilis subsp. subtilis str. 168

43.59

100

0.436

Multiple sequence alignment