Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BBJ33_RS15000 Genome accession   NZ_CP016395
Coordinates   3097472..3098116 (-) Length   214 a.a.
NCBI ID   WP_069473558.1    Uniprot ID   -
Organism   Bacillus velezensis strain M75     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3092472..3103116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBJ33_RS14965 (BBJ33_14965) - 3093657..3094088 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  BBJ33_RS14970 (BBJ33_14970) - 3094088..3094429 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  BBJ33_RS14975 (BBJ33_14975) - 3094422..3095903 (+) 1482 WP_003152061.1 Na+/H+ antiporter subunit D -
  BBJ33_RS14980 (BBJ33_14980) - 3095909..3096385 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  BBJ33_RS14985 (BBJ33_14985) - 3096385..3096669 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  BBJ33_RS14990 (BBJ33_14990) mnhG 3096653..3097027 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  BBJ33_RS14995 (BBJ33_14995) - 3097067..3097450 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  BBJ33_RS15000 (BBJ33_15000) comA 3097472..3098116 (-) 645 WP_069473558.1 response regulator transcription factor Regulator
  BBJ33_RS15005 (BBJ33_15005) comP 3098197..3100500 (-) 2304 WP_069473559.1 histidine kinase Regulator
  BBJ33_RS15010 (BBJ33_15010) comX 3100520..3100699 (-) 180 WP_306383677.1 competence pheromone ComX -
  BBJ33_RS15015 (BBJ33_15015) comQ 3100653..3101639 (-) 987 WP_269321599.1 class 1 isoprenoid biosynthesis enzyme Regulator
  BBJ33_RS15020 (BBJ33_15020) degQ 3101770..3101910 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BBJ33_RS15025 (BBJ33_15025) - 3102376..3102717 (+) 342 WP_003152040.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24261.64 Da        Isoelectric Point: 4.9953

>NTDB_id=187931 BBJ33_RS15000 WP_069473558.1 3097472..3098116(-) (comA) [Bacillus velezensis strain M75]
MKKILVIDDHSAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=187931 BBJ33_RS15000 WP_069473558.1 3097472..3098116(-) (comA) [Bacillus velezensis strain M75]
ATGAAAAAGATACTAGTGATTGATGATCATTCGGCTGTCATGGAGGGGACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86

Multiple sequence alignment