Detailed information NTG0187789

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: A9258_RS02105
• Genome accession: NZ_CP016392
• Coordinates: 466466..467338 (-)
• Length: 290 a.a.
• NCBI ID: WP_016352170.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain GYK1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 461466..472338

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A9258_RS02080 (A9258_02080)	-	463201..464385 (+)	1185	WP_016352174.1	tetratricopeptide repeat protein	-
A9258_RS02085 (A9258_02085)	mutT	464394..464807 (+)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
A9258_RS02090 (A9258_02090)	yacG	464868..465062 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
A9258_RS02095 (A9258_02095)	zapD	465072..465794 (-)	723	WP_016352172.1	cell division protein ZapD	-
A9258_RS02100 (A9258_02100)	coaE	465832..466446 (-)	615	WP_016352171.1	dephospho-CoA kinase	-
A9258_RS02105 (A9258_02105)	pilD	466466..467338 (-)	873	WP_016352170.1	prepilin peptidase	Machinery gene
A9258_RS02110 (A9258_02110)	pilC	467361..468602 (-)	1242	WP_016352169.1	type II secretion system F family protein	Machinery gene
A9258_RS02115 (A9258_02115)	pilB	468718..470424 (-)	1707	WP_016352168.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
A9258_RS22120	tapA	470431..470853 (-)	423	WP_016352167.1	type IVa pilus major pilin TapA	-
A9258_RS02125 (A9258_02125)	nadC	471176..472033 (-)	858	WP_016352165.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32464.76 Da
• Isoelectric Point: 6.7410

>NTDB_id=187789 A9258_RS02105 WP_016352170.1 466466..467338(-) (pilD) [Aeromonas hydrophila strain GYK1]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAIENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVTATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLATFL

Nucleotide

• Length: 873 bp

>NTDB_id=187789 A9258_RS02105 WP_016352170.1 466466..467338(-) (pilD) [Aeromonas hydrophila strain GYK1]
ATGTTGCTGATCACTGACGTTTTTCACAGCTTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCAGAGACACAGCCGCAGCAGGAAGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGTCCTCATTGCGGCCACGCA
ATTACGGCCATAGAGAACATCCCCCTACTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCTATCTC
GGCCCGTTATCCTCTGGTAGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCACCGCAACATTCGCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCTGACCAG
CTGACCCTGCCATTGCTATGGGGCGGTCTGCTGTTCAATTTGGCTGGGGGATTTGTACCGCTGGCCGATGCGGTGATCGG
TGCGATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGTTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGTTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATCCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCGCGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.839	98.621	0.6
pilD	Vibrio campbellii strain DS40M4	55.594	98.621	0.548
pilD	Acinetobacter baumannii D1279779	54.035	98.276	0.531
pilD	Acinetobacter nosocomialis M2	54.035	98.276	0.531
pilD	Neisseria gonorrhoeae MS11	48.872	91.724	0.448