Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   vm_RS15655 Genome accession   NZ_CP016384
Coordinates   93791..94960 (-) Length   389 a.a.
NCBI ID   WP_001082287.1    Uniprot ID   -
Organism   Vibrio mimicus strain SCCF01     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 88791..99960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vm_RS15650 (VM_15655) cqsS 91648..93708 (+) 2061 WP_081337956.1 hybrid sensor histidine kinase/response regulator Regulator
  vm_RS15655 (VM_15660) cqsA 93791..94960 (-) 1170 WP_001082287.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  vm_RS15660 (VM_15665) - 95157..96119 (-) 963 WP_001104794.1 TDT family transporter -
  vm_RS15665 (VM_15670) clcA 96221..97627 (-) 1407 WP_070382698.1 H(+)/Cl(-) exchange transporter ClcA -
  vm_RS15670 (VM_15675) - 98109..99098 (+) 990 WP_070382699.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43788.07 Da        Isoelectric Point: 6.6558

>NTDB_id=187708 vm_RS15655 WP_001082287.1 93791..94960(-) (cqsA) [Vibrio mimicus strain SCCF01]
MNRTHLPDFIQDKITHYIENYFDINKNGKHLVLGKQARSEDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTLGTVAPLAELVNLSKEFGCALLVDESHSLGTHGPNGAGLLAELNLTHEVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLDIIECADDKRHHLEKMAKKLRIGLTQLGMTIRSESQIIGL
ETGDERNTEKVRDFLENNGLFGSVFCRPATSKNKNIIRLSLNSDVTEKQITRIIEICTDAVKCSDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=187708 vm_RS15655 WP_001082287.1 93791..94960(-) (cqsA) [Vibrio mimicus strain SCCF01]
ATGAATAGAACACATCTTCCTGATTTTATTCAGGATAAGATAACTCACTATATTGAAAATTATTTTGATATAAACAAAAA
CGGCAAACATCTAGTATTGGGAAAACAAGCTAGAAGTGAAGATATTATTTTGCAAAGTAATGATTATCTCGCACTGGCCA
ATCATCCTTTAATTAAAGCGCGTTTAGCAAAGTCTTTGCTTGAGGAACAGCAGAGCTTATTTATGTCAGCCTCATTCTTA
CAAAATGATTATGACAAACCCATGATAGAGAAGCGCTTGGCCAAGTTCACAGGCTTTGATGAGTGTTTACTGTCTCAATC
CGGTTGGAATGCCAACGTAGGGTTGTTACAAACCATTTGCCAACCTAACACCAATGTCTACATCGACTTTTTCGCTCACA
TGTCATTGTGGGAAGGAGCACGCTATGCGAACGCTCAAGCCCACCCTTTTATGCACAATAACTGTGACCATTTACGCATG
CTCATCCAGCGCCATGGGCCTGGAATCATAGTTGTCGATTCAATTTACAGCACTCTTGGCACTGTTGCGCCACTGGCAGA
GCTAGTCAATCTCAGTAAGGAGTTCGGCTGCGCTTTACTGGTTGATGAATCGCACTCTTTGGGGACGCACGGCCCTAACG
GTGCAGGTTTACTCGCTGAGTTGAACCTCACCCATGAAGTGCATTTCATGACCGCCAGCTTAGCCAAAACCTTTGCATAT
CGAGCTGGAGCGATTTGGTGTAATAATGAGGTCAACCGTTGCGTGCCATTTATTAGCTATCCGGCGATTTTTAGCTCAAC
CTTACTTCCTTATGAAGCGGCTGGTTTAGAAACCACATTAGATATTATTGAATGTGCGGATGATAAACGGCATCACTTAG
AAAAAATGGCCAAAAAGCTGCGCATAGGGTTAACGCAATTAGGCATGACAATTCGTAGTGAAAGCCAAATTATTGGTTTA
GAAACGGGGGATGAACGAAATACAGAAAAAGTCCGTGACTTTTTAGAAAACAATGGCTTATTTGGTTCTGTTTTTTGTCG
ACCTGCCACATCAAAAAACAAGAATATTATCCGCTTATCACTCAATAGTGATGTGACGGAAAAGCAAATAACTCGGATAA
TTGAAATATGCACTGATGCAGTAAAATGTTCGGATTTTTATTTTCGTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(42-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

91.003

100

0.91

Multiple sequence alignment