Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   vm_RS15650 Genome accession   NZ_CP016384
Coordinates   91648..93708 (+) Length   686 a.a.
NCBI ID   WP_081337956.1    Uniprot ID   -
Organism   Vibrio mimicus strain SCCF01     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 86648..98708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vm_RS15640 (VM_15645) - 87364..88503 (+) 1140 WP_070382696.1 exonuclease SbcCD subunit D -
  vm_RS15645 (VM_15650) - 88505..91546 (+) 3042 WP_070382697.1 AAA family ATPase -
  vm_RS15650 (VM_15655) cqsS 91648..93708 (+) 2061 WP_081337956.1 hybrid sensor histidine kinase/response regulator Regulator
  vm_RS15655 (VM_15660) cqsA 93791..94960 (-) 1170 WP_001082287.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  vm_RS15660 (VM_15665) - 95157..96119 (-) 963 WP_001104794.1 TDT family transporter -
  vm_RS15665 (VM_15670) clcA 96221..97627 (-) 1407 WP_070382698.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78583.61 Da        Isoelectric Point: 5.4132

>NTDB_id=187707 vm_RS15650 WP_081337956.1 91648..93708(+) (cqsS) [Vibrio mimicus strain SCCF01]
MTVSMEVIKKVYQYAEPNFSLVGWMGMLGYPAYYFIWEYWFPQTYENLGLRFVAALLFAGLAFRESLPNKWKRYMPYYFL
LTIGFCLPFFFCFMMLMNNWSTIWAMSFMASIFLHILLVHDTKVMALQAITSILMAYVAVYGFTDFQPNTLIEWPYVPVF
LFTYVFGNLCFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVIRTMLPKPQAAAQSTYPLDAQELDLLHQILN
EADDVIYSGNNTIDLLLTSIDENRVSTASFKKYAAAEVIEKALKSFPYKNAADQHAIQLDVRQPFDFFGSDTLLTYALFN
LLKNAFYYQKEQFSVCIQIEQSAEHNLIKVRDNGVGIAPEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMTAFGGTIRCFS
KHGEWTEFVLTFPRYESKNVREIKTDLLKSKSVIYIGSNQSIVRELNQLAAEEEFGFTALSAQQAVRRQDYEFEFDLILL
DLDDATQQGELLPKLEGTLSFAEGCIGYIYDPSKEYAVNINRYLHIQPISIHSVLKKTSKVIDRLLFEQDSLVMNRNIIP
LQKSRHERRILVVDDNQSIRTFTSILLEQQGYEVVQANDGCEVIAYMDTQTIDLVLMDIEMPKISGLEATHLIRSSDRDY
KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWV

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=187707 vm_RS15650 WP_081337956.1 91648..93708(+) (cqsS) [Vibrio mimicus strain SCCF01]
GTGACGGTGAGCATGGAAGTGATAAAAAAAGTTTACCAGTACGCGGAACCCAATTTTTCATTGGTGGGGTGGATGGGGAT
GCTCGGCTATCCTGCCTATTACTTCATTTGGGAATACTGGTTTCCGCAAACCTATGAAAATTTAGGTTTGCGTTTTGTTG
CTGCTTTATTGTTCGCTGGGCTTGCGTTTCGGGAGTCATTGCCGAATAAGTGGAAGCGGTACATGCCGTACTACTTTTTG
CTCACAATAGGTTTTTGCTTACCTTTTTTCTTTTGTTTCATGATGTTGATGAACAACTGGTCGACCATTTGGGCGATGTC
GTTCATGGCATCCATCTTTTTACACATCCTCTTAGTGCACGATACTAAGGTGATGGCGCTGCAAGCCATTACCTCGATTT
TGATGGCTTATGTGGCGGTGTATGGCTTCACGGATTTCCAACCGAATACCTTGATTGAATGGCCGTATGTGCCTGTTTTC
TTGTTCACTTATGTCTTCGGCAATTTGTGTTTCTTCCGCAACCAAATCTCCCATGAAACCAAAGTCTCCATTGCTAAAAC
ATTTGGCGCGGGGATCGCACATGAAATGCGTAACCCACTGAGTGCCTTGAAAACATCAATAGACGTCATTCGTACCATGC
TTCCTAAGCCGCAGGCAGCTGCGCAATCGACTTATCCATTGGATGCACAAGAACTGGATCTTCTACACCAGATTTTGAAT
GAGGCGGATGATGTTATCTATTCAGGCAATAACACCATTGATTTGTTGTTGACCTCAATTGATGAAAACCGTGTTTCCAC
CGCAAGCTTTAAAAAATACGCTGCGGCTGAAGTAATTGAGAAAGCACTCAAGAGCTTTCCTTATAAAAATGCCGCTGATC
AACACGCGATTCAGTTGGATGTTCGTCAGCCATTTGATTTTTTTGGTAGTGATACCTTGTTGACGTATGCCTTGTTCAAC
TTACTGAAGAATGCCTTTTATTATCAGAAAGAACAATTTTCCGTTTGTATTCAAATTGAGCAGAGTGCTGAGCACAACCT
GATTAAAGTGCGTGATAACGGGGTAGGTATTGCTCCTGAAATGTTGGAAGACATCTTTCGTGACTTTTATACCTTTGGCA
AAAATGGCAGTTACGGCCTAGGATTGCCGTTTTGTCGTAAAGTGATGACGGCATTTGGCGGCACCATTCGCTGTTTTTCT
AAGCATGGTGAGTGGACGGAGTTCGTGCTGACGTTTCCACGTTACGAGTCAAAAAACGTTAGAGAAATTAAAACCGATTT
ATTAAAGTCCAAATCAGTTATTTACATAGGCTCGAATCAGTCGATTGTTCGAGAACTGAATCAGTTAGCTGCAGAGGAAG
AGTTTGGCTTTACCGCACTTTCAGCCCAGCAAGCGGTAAGACGGCAAGACTATGAATTTGAATTCGACCTAATCTTACTG
GACCTAGATGATGCCACTCAGCAAGGCGAACTTTTACCCAAACTTGAAGGAACGTTGAGTTTCGCAGAAGGCTGTATTGG
GTATATCTATGACCCTAGCAAAGAGTATGCGGTGAATATCAACCGTTACCTGCATATTCAACCGATCAGCATCCATTCCG
TGCTGAAGAAAACCAGCAAAGTCATCGATCGTTTGCTCTTTGAGCAAGACTCTCTGGTGATGAATCGCAACATTATTCCG
CTGCAAAAAAGTCGCCATGAACGGCGAATTCTTGTCGTTGATGACAACCAATCTATCCGTACTTTCACGTCGATACTGCT
TGAGCAGCAAGGATATGAGGTTGTACAAGCGAATGATGGGTGCGAGGTGATCGCCTATATGGATACTCAGACTATCGACT
TAGTGTTGATGGACATTGAGATGCCTAAAATCAGTGGCTTAGAAGCGACACATCTCATCCGAAGCTCTGATCGTGATTAT
AAAAACATTCCTATCATTGGATACACAGGTGATAACAGTCCGAAAACCTTAGCGTTGGTGCAAACATCCGGCATGAACGA
TTTCATTGTTAAGCCTGCTGACCGTGATGTATTACTGAATAAAGTGGCGGCTTGGGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(570-682)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

84.84

100

0.848

Multiple sequence alignment