Detailed information
Bioinformatically predicted
Overview
| Name | tfoS | Type | Regulator |
| Locus tag | vm_RS04540 | Genome accession | NZ_CP016383 |
| Coordinates | 914793..918140 (+) | Length | 1115 a.a. |
| NCBI ID | WP_070381500.1 | Uniprot ID | - |
| Organism | Vibrio mimicus strain SCCF01 | ||
| Function | chitin sensor (predicted from homology) Competence regulation |
||
Genomic Context
Location: 909793..923140
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| vm_RS04515 (VM_04520) | sucC | 909936..911102 (+) | 1167 | WP_001048577.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| vm_RS04520 (VM_04525) | sucD | 911102..911974 (+) | 873 | WP_000025475.1 | succinate--CoA ligase subunit alpha | - |
| vm_RS04525 (VM_04530) | znuB | 912062..912844 (-) | 783 | WP_070382554.1 | zinc ABC transporter permease subunit ZnuB | - |
| vm_RS04530 (VM_04535) | znuC | 912837..913625 (-) | 789 | WP_000996138.1 | zinc ABC transporter ATP-binding protein ZnuC | - |
| vm_RS04535 (VM_04540) | znuA | 913708..914586 (+) | 879 | WP_070381499.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| vm_RS04540 (VM_04545) | tfoS | 914793..918140 (+) | 3348 | WP_070381500.1 | AraC family transcriptional regulator | Regulator |
| vm_RS04545 (VM_04550) | - | 918675..918905 (+) | 231 | WP_005512398.1 | FeoA family protein | - |
| vm_RS04550 (VM_04555) | feoB | 918902..921178 (+) | 2277 | WP_070381501.1 | Fe(2+) transporter permease subunit FeoB | - |
| vm_RS04555 (VM_04560) | - | 921175..921405 (+) | 231 | WP_070381502.1 | FeoC-like transcriptional regulator | - |
| vm_RS04560 (VM_04565) | - | 921556..922941 (+) | 1386 | WP_070381503.1 | IS4 family transposase | - |
Sequence
Protein
Download Length: 1115 a.a. Molecular weight: 126715.27 Da Isoelectric Point: 7.7424
>NTDB_id=187680 vm_RS04540 WP_070381500.1 914793..918140(+) (tfoS) [Vibrio mimicus strain SCCF01]
MLRTFLYGCLLNLIIPSLVLALDKSMSVFYPLPIQEQGRVIVAQNLYLGNDGGIWVHDVHGKVMYFDGQNILPRRGSVLP
QTSSHIVYANSAFWTFEQHELFRTYPGKPKELMISLTPGTQINQMGASNGMIWMTDSENFYSYEIRSGRINSLSLHELYQ
LNSASAVVINDAQYMVSKWALATNVGVYLSEEHGFAHVKKSGKSYIQKLYFSHKRRELLVGSKHGAIVVDIENKRTLPEK
IGSSHVLSIAETEKEYWVGTEDGLYVYSIITGKVVQLESNNSGDYTLLGRKIYAMVNDFQGGMWIATDKGIFYYSLFGQQ
FTRYAAQTLSNDGNEAKLSKPKALNSAGGYLAITQQGLYSFNFSDELRKHLIYPGEINDFVISGDNVWIATKKGLIRYNL
NRRSVDTPQLPLSLLQTEVDHLTMDRNGNLWGSSSHQIWSFSPKDQTYTDYGSEWMVKKFSPSRITLLAAVEKGIVIGTE
HGAYSLFGKQIRFDFASHRYGEIIQAVEDADRHIWVVGSYGVFRWRKDQYEATPVELIEENIQPLCIAESKQGMWLVSSK
GISYYHLQGQLNKHFGAPYGLVSNEFLSSSCAVGGEQGSSSLIIGSQLGVVKANTEELAVSNVPNIQVMFSQVSVNHSTK
LLGYRMPEPLKIAYGDAISFQFGALPSSRNQSLEYKLNDDPHWQRFDWALLNFDQLLPGKYRLRVRSANPTQRYRTETLF
DFEVLQPWYMTPMAIVGYVVSLFSVLALAFWWRTRMMVKVNRKLKAQVDLKTSQLRHQSKIVLSNNHQLRKQLQLHHNIL
GKVLEGVDPLLRHLSSYAKVRGWSEFDIPFCKVKQELAQLHFMHRGDVEESKYHDLHLLIESALKSWQEEYSKAAIQLTY
SGETRFIEVRQFNLDVLFNAVLTDAIKRLYKHQELNIRLDIRDAHAVVIFSDYGAPIENIESVQVNLTGYGAYPLQELVT
RSGGELRVFALQERNIVELAWPLATLAELEPFKSDESESDVKPSIDAVDKEWLSKIEKLIEQNYSDPNFTTSSAAKSLFV
SERSLQRRFKAVTGKTFKESLNEVRLEKACQSLLAGTKIAQAAFDCGFNDPSYFSQRFKHHFGLSPSQFIEDREA
MLRTFLYGCLLNLIIPSLVLALDKSMSVFYPLPIQEQGRVIVAQNLYLGNDGGIWVHDVHGKVMYFDGQNILPRRGSVLP
QTSSHIVYANSAFWTFEQHELFRTYPGKPKELMISLTPGTQINQMGASNGMIWMTDSENFYSYEIRSGRINSLSLHELYQ
LNSASAVVINDAQYMVSKWALATNVGVYLSEEHGFAHVKKSGKSYIQKLYFSHKRRELLVGSKHGAIVVDIENKRTLPEK
IGSSHVLSIAETEKEYWVGTEDGLYVYSIITGKVVQLESNNSGDYTLLGRKIYAMVNDFQGGMWIATDKGIFYYSLFGQQ
FTRYAAQTLSNDGNEAKLSKPKALNSAGGYLAITQQGLYSFNFSDELRKHLIYPGEINDFVISGDNVWIATKKGLIRYNL
NRRSVDTPQLPLSLLQTEVDHLTMDRNGNLWGSSSHQIWSFSPKDQTYTDYGSEWMVKKFSPSRITLLAAVEKGIVIGTE
HGAYSLFGKQIRFDFASHRYGEIIQAVEDADRHIWVVGSYGVFRWRKDQYEATPVELIEENIQPLCIAESKQGMWLVSSK
GISYYHLQGQLNKHFGAPYGLVSNEFLSSSCAVGGEQGSSSLIIGSQLGVVKANTEELAVSNVPNIQVMFSQVSVNHSTK
LLGYRMPEPLKIAYGDAISFQFGALPSSRNQSLEYKLNDDPHWQRFDWALLNFDQLLPGKYRLRVRSANPTQRYRTETLF
DFEVLQPWYMTPMAIVGYVVSLFSVLALAFWWRTRMMVKVNRKLKAQVDLKTSQLRHQSKIVLSNNHQLRKQLQLHHNIL
GKVLEGVDPLLRHLSSYAKVRGWSEFDIPFCKVKQELAQLHFMHRGDVEESKYHDLHLLIESALKSWQEEYSKAAIQLTY
SGETRFIEVRQFNLDVLFNAVLTDAIKRLYKHQELNIRLDIRDAHAVVIFSDYGAPIENIESVQVNLTGYGAYPLQELVT
RSGGELRVFALQERNIVELAWPLATLAELEPFKSDESESDVKPSIDAVDKEWLSKIEKLIEQNYSDPNFTTSSAAKSLFV
SERSLQRRFKAVTGKTFKESLNEVRLEKACQSLLAGTKIAQAAFDCGFNDPSYFSQRFKHHFGLSPSQFIEDREA
Nucleotide
Download Length: 3348 bp
>NTDB_id=187680 vm_RS04540 WP_070381500.1 914793..918140(+) (tfoS) [Vibrio mimicus strain SCCF01]
GTGTTGCGCACATTTTTATACGGCTGCTTGCTGAACCTCATTATTCCTTCACTGGTATTGGCGCTGGATAAGTCAATGTC
GGTATTTTATCCCTTGCCTATTCAAGAGCAGGGGAGAGTCATTGTCGCTCAAAATCTCTATCTTGGTAACGATGGAGGAA
TTTGGGTTCATGATGTCCATGGCAAGGTCATGTATTTTGATGGACAAAATATCCTGCCGCGACGTGGCTCGGTTCTACCT
CAAACCTCTAGCCATATTGTTTATGCGAATAGTGCTTTCTGGACTTTCGAGCAGCATGAACTGTTTAGGACCTATCCCGG
GAAACCCAAAGAGCTGATGATAAGCCTCACACCCGGTACCCAAATCAACCAGATGGGGGCATCCAATGGCATGATTTGGA
TGACGGATAGTGAAAATTTTTATAGTTATGAGATTCGCAGTGGGCGAATTAACTCTCTATCACTGCATGAGCTTTATCAG
CTCAATAGTGCGAGTGCCGTGGTGATTAATGATGCTCAATACATGGTTTCCAAATGGGCTTTGGCAACGAATGTTGGCGT
GTATTTATCTGAAGAGCACGGATTTGCACACGTTAAAAAATCAGGAAAGAGCTATATTCAAAAGCTGTATTTCTCACACA
AACGCCGAGAGTTGTTAGTAGGTTCAAAGCATGGCGCTATTGTTGTCGATATTGAAAATAAGCGTACGTTACCCGAAAAA
ATTGGCTCCTCACATGTCTTATCCATTGCGGAAACAGAAAAAGAGTATTGGGTTGGTACGGAAGATGGATTGTATGTTTA
CTCAATTATCACGGGTAAGGTGGTTCAGTTAGAGAGTAATAACAGCGGTGATTACACCTTATTGGGTAGGAAAATCTACG
CCATGGTGAACGATTTTCAAGGTGGAATGTGGATAGCAACAGATAAAGGCATCTTTTATTACTCATTATTTGGGCAACAA
TTCACCCGCTATGCCGCTCAAACTCTCTCAAACGATGGTAATGAAGCGAAGCTCAGTAAACCTAAGGCTTTGAATTCGGC
TGGTGGCTATTTAGCCATAACACAGCAAGGCCTCTATAGCTTCAATTTTTCCGATGAGTTGCGTAAACATCTGATTTATC
CCGGTGAGATTAATGACTTTGTCATATCGGGAGACAATGTTTGGATTGCGACAAAGAAAGGTTTAATTCGATATAACCTA
AACCGCCGCAGTGTTGATACTCCGCAGTTGCCTCTCTCATTACTGCAAACGGAAGTCGATCACCTAACCATGGATAGGAA
TGGGAACCTGTGGGGATCGAGCAGTCATCAGATCTGGTCATTCTCACCTAAGGATCAAACCTATACGGATTATGGTTCAG
AGTGGATGGTTAAGAAGTTTTCGCCTTCGCGAATCACTCTACTTGCTGCTGTGGAAAAAGGCATTGTGATTGGCACAGAA
CATGGTGCTTATTCCTTGTTCGGTAAACAGATTCGCTTTGATTTTGCTAGTCACCGTTATGGTGAAATTATCCAAGCGGT
AGAAGATGCGGATCGACACATCTGGGTGGTTGGATCGTATGGCGTTTTTCGTTGGCGTAAAGATCAATACGAGGCGACTC
CAGTAGAACTCATCGAGGAGAATATTCAACCTTTGTGCATTGCTGAATCAAAGCAAGGCATGTGGCTTGTCTCTTCTAAA
GGCATCAGTTATTACCACCTTCAAGGCCAATTGAACAAACACTTTGGTGCTCCTTATGGCTTGGTCAGTAATGAGTTTTT
ATCTTCATCATGTGCTGTAGGTGGTGAACAAGGCTCTTCCTCACTCATCATAGGTTCACAACTCGGTGTTGTTAAAGCGA
ATACTGAGGAATTAGCGGTTTCCAATGTGCCGAATATTCAGGTGATGTTTAGCCAAGTAAGCGTTAACCACAGCACCAAG
TTGCTGGGTTATCGCATGCCGGAACCGCTGAAAATTGCTTATGGTGATGCGATTAGCTTCCAGTTTGGAGCTTTGCCTTC
TTCGAGAAATCAGTCTTTAGAATACAAGCTTAATGATGATCCACATTGGCAGCGTTTTGATTGGGCATTACTGAACTTTG
ACCAACTCTTACCCGGAAAATATCGTTTGAGAGTACGCAGTGCAAACCCAACTCAACGATACCGTACTGAAACATTATTT
GATTTTGAAGTTTTGCAGCCTTGGTATATGACCCCGATGGCCATCGTTGGTTATGTTGTGAGTCTTTTTAGCGTATTGGC
TCTGGCTTTTTGGTGGCGTACGAGAATGATGGTGAAGGTTAACCGGAAATTAAAAGCACAGGTTGATCTAAAAACCAGTC
AATTACGCCATCAGAGCAAGATTGTATTGAGTAATAACCATCAACTCCGTAAGCAACTCCAACTGCACCACAACATCCTT
GGTAAAGTTCTGGAAGGGGTTGACCCTTTACTGCGTCATTTGTCCTCTTATGCGAAAGTTCGTGGGTGGAGTGAGTTTGA
CATTCCTTTCTGTAAAGTGAAGCAGGAACTCGCTCAACTTCATTTTATGCACCGAGGTGATGTTGAAGAGAGTAAATATC
ACGATTTGCATCTATTGATCGAATCAGCATTAAAGAGTTGGCAGGAAGAATATAGCAAAGCCGCAATTCAACTGACTTAT
AGTGGTGAAACTCGGTTTATTGAAGTCCGTCAATTTAATCTTGACGTTTTGTTCAATGCCGTATTAACCGATGCCATAAA
GCGGCTGTATAAACACCAAGAGTTGAATATACGCCTTGATATTAGGGATGCTCATGCCGTTGTCATATTTTCTGATTATG
GAGCACCGATAGAAAACATCGAATCGGTCCAAGTGAACTTGACTGGCTATGGAGCCTATCCGCTGCAAGAGTTAGTAACT
CGAAGTGGAGGAGAGTTGAGAGTCTTTGCACTGCAAGAGCGTAATATTGTCGAGCTTGCCTGGCCGTTAGCGACTCTTGC
TGAACTTGAGCCATTTAAGTCAGATGAAAGCGAATCAGATGTAAAACCGAGCATTGATGCCGTAGATAAAGAGTGGTTAA
GTAAGATCGAGAAATTGATTGAACAGAACTACAGTGACCCTAATTTCACCACTTCAAGCGCCGCAAAATCCCTGTTTGTG
TCGGAGCGAAGTTTGCAACGCCGCTTTAAAGCTGTAACCGGTAAAACCTTTAAAGAATCTCTTAATGAAGTCAGATTAGA
AAAGGCATGTCAGAGTTTATTGGCCGGTACCAAAATTGCTCAAGCTGCCTTTGACTGCGGATTTAATGACCCATCCTATT
TTAGCCAACGCTTCAAACACCATTTCGGATTATCACCAAGTCAATTCATCGAAGATCGAGAAGCCTAG
GTGTTGCGCACATTTTTATACGGCTGCTTGCTGAACCTCATTATTCCTTCACTGGTATTGGCGCTGGATAAGTCAATGTC
GGTATTTTATCCCTTGCCTATTCAAGAGCAGGGGAGAGTCATTGTCGCTCAAAATCTCTATCTTGGTAACGATGGAGGAA
TTTGGGTTCATGATGTCCATGGCAAGGTCATGTATTTTGATGGACAAAATATCCTGCCGCGACGTGGCTCGGTTCTACCT
CAAACCTCTAGCCATATTGTTTATGCGAATAGTGCTTTCTGGACTTTCGAGCAGCATGAACTGTTTAGGACCTATCCCGG
GAAACCCAAAGAGCTGATGATAAGCCTCACACCCGGTACCCAAATCAACCAGATGGGGGCATCCAATGGCATGATTTGGA
TGACGGATAGTGAAAATTTTTATAGTTATGAGATTCGCAGTGGGCGAATTAACTCTCTATCACTGCATGAGCTTTATCAG
CTCAATAGTGCGAGTGCCGTGGTGATTAATGATGCTCAATACATGGTTTCCAAATGGGCTTTGGCAACGAATGTTGGCGT
GTATTTATCTGAAGAGCACGGATTTGCACACGTTAAAAAATCAGGAAAGAGCTATATTCAAAAGCTGTATTTCTCACACA
AACGCCGAGAGTTGTTAGTAGGTTCAAAGCATGGCGCTATTGTTGTCGATATTGAAAATAAGCGTACGTTACCCGAAAAA
ATTGGCTCCTCACATGTCTTATCCATTGCGGAAACAGAAAAAGAGTATTGGGTTGGTACGGAAGATGGATTGTATGTTTA
CTCAATTATCACGGGTAAGGTGGTTCAGTTAGAGAGTAATAACAGCGGTGATTACACCTTATTGGGTAGGAAAATCTACG
CCATGGTGAACGATTTTCAAGGTGGAATGTGGATAGCAACAGATAAAGGCATCTTTTATTACTCATTATTTGGGCAACAA
TTCACCCGCTATGCCGCTCAAACTCTCTCAAACGATGGTAATGAAGCGAAGCTCAGTAAACCTAAGGCTTTGAATTCGGC
TGGTGGCTATTTAGCCATAACACAGCAAGGCCTCTATAGCTTCAATTTTTCCGATGAGTTGCGTAAACATCTGATTTATC
CCGGTGAGATTAATGACTTTGTCATATCGGGAGACAATGTTTGGATTGCGACAAAGAAAGGTTTAATTCGATATAACCTA
AACCGCCGCAGTGTTGATACTCCGCAGTTGCCTCTCTCATTACTGCAAACGGAAGTCGATCACCTAACCATGGATAGGAA
TGGGAACCTGTGGGGATCGAGCAGTCATCAGATCTGGTCATTCTCACCTAAGGATCAAACCTATACGGATTATGGTTCAG
AGTGGATGGTTAAGAAGTTTTCGCCTTCGCGAATCACTCTACTTGCTGCTGTGGAAAAAGGCATTGTGATTGGCACAGAA
CATGGTGCTTATTCCTTGTTCGGTAAACAGATTCGCTTTGATTTTGCTAGTCACCGTTATGGTGAAATTATCCAAGCGGT
AGAAGATGCGGATCGACACATCTGGGTGGTTGGATCGTATGGCGTTTTTCGTTGGCGTAAAGATCAATACGAGGCGACTC
CAGTAGAACTCATCGAGGAGAATATTCAACCTTTGTGCATTGCTGAATCAAAGCAAGGCATGTGGCTTGTCTCTTCTAAA
GGCATCAGTTATTACCACCTTCAAGGCCAATTGAACAAACACTTTGGTGCTCCTTATGGCTTGGTCAGTAATGAGTTTTT
ATCTTCATCATGTGCTGTAGGTGGTGAACAAGGCTCTTCCTCACTCATCATAGGTTCACAACTCGGTGTTGTTAAAGCGA
ATACTGAGGAATTAGCGGTTTCCAATGTGCCGAATATTCAGGTGATGTTTAGCCAAGTAAGCGTTAACCACAGCACCAAG
TTGCTGGGTTATCGCATGCCGGAACCGCTGAAAATTGCTTATGGTGATGCGATTAGCTTCCAGTTTGGAGCTTTGCCTTC
TTCGAGAAATCAGTCTTTAGAATACAAGCTTAATGATGATCCACATTGGCAGCGTTTTGATTGGGCATTACTGAACTTTG
ACCAACTCTTACCCGGAAAATATCGTTTGAGAGTACGCAGTGCAAACCCAACTCAACGATACCGTACTGAAACATTATTT
GATTTTGAAGTTTTGCAGCCTTGGTATATGACCCCGATGGCCATCGTTGGTTATGTTGTGAGTCTTTTTAGCGTATTGGC
TCTGGCTTTTTGGTGGCGTACGAGAATGATGGTGAAGGTTAACCGGAAATTAAAAGCACAGGTTGATCTAAAAACCAGTC
AATTACGCCATCAGAGCAAGATTGTATTGAGTAATAACCATCAACTCCGTAAGCAACTCCAACTGCACCACAACATCCTT
GGTAAAGTTCTGGAAGGGGTTGACCCTTTACTGCGTCATTTGTCCTCTTATGCGAAAGTTCGTGGGTGGAGTGAGTTTGA
CATTCCTTTCTGTAAAGTGAAGCAGGAACTCGCTCAACTTCATTTTATGCACCGAGGTGATGTTGAAGAGAGTAAATATC
ACGATTTGCATCTATTGATCGAATCAGCATTAAAGAGTTGGCAGGAAGAATATAGCAAAGCCGCAATTCAACTGACTTAT
AGTGGTGAAACTCGGTTTATTGAAGTCCGTCAATTTAATCTTGACGTTTTGTTCAATGCCGTATTAACCGATGCCATAAA
GCGGCTGTATAAACACCAAGAGTTGAATATACGCCTTGATATTAGGGATGCTCATGCCGTTGTCATATTTTCTGATTATG
GAGCACCGATAGAAAACATCGAATCGGTCCAAGTGAACTTGACTGGCTATGGAGCCTATCCGCTGCAAGAGTTAGTAACT
CGAAGTGGAGGAGAGTTGAGAGTCTTTGCACTGCAAGAGCGTAATATTGTCGAGCTTGCCTGGCCGTTAGCGACTCTTGC
TGAACTTGAGCCATTTAAGTCAGATGAAAGCGAATCAGATGTAAAACCGAGCATTGATGCCGTAGATAAAGAGTGGTTAA
GTAAGATCGAGAAATTGATTGAACAGAACTACAGTGACCCTAATTTCACCACTTCAAGCGCCGCAAAATCCCTGTTTGTG
TCGGAGCGAAGTTTGCAACGCCGCTTTAAAGCTGTAACCGGTAAAACCTTTAAAGAATCTCTTAATGAAGTCAGATTAGA
AAAGGCATGTCAGAGTTTATTGGCCGGTACCAAAATTGCTCAAGCTGCCTTTGACTGCGGATTTAATGACCCATCCTATT
TTAGCCAACGCTTCAAACACCATTTCGGATTATCACCAAGTCAATTCATCGAAGATCGAGAAGCCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| tfoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
80.717 |
100 |
0.807 |