Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   B6R96_RS16180 Genome accession   NZ_CP020555
Coordinates   3665746..3667158 (+) Length   470 a.a.
NCBI ID   WP_030389740.1    Uniprot ID   -
Organism   Streptomyces sp. Sge12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3660746..3672158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6R96_RS16160 (B6R96_16160) - 3661335..3661760 (-) 426 WP_079405735.1 DUF3592 domain-containing protein -
  B6R96_RS16165 (B6R96_16165) - 3661837..3662775 (-) 939 WP_030389743.1 Ppx/GppA phosphatase family protein -
  B6R96_RS16170 (B6R96_16170) - 3662839..3663711 (+) 873 WP_081522782.1 hypothetical protein -
  B6R96_RS16175 (B6R96_16175) - 3663790..3665553 (-) 1764 WP_107475525.1 sigma-70 family RNA polymerase sigma factor -
  B6R96_RS16180 (B6R96_16180) radA/sms 3665746..3667158 (+) 1413 WP_030389740.1 DNA repair protein RadA Machinery gene
  B6R96_RS16185 (B6R96_16185) disA 3667343..3668467 (+) 1125 WP_030727101.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  B6R96_RS16190 (B6R96_16190) - 3668501..3669238 (-) 738 WP_324603934.1 hypothetical protein -
  B6R96_RS16195 (B6R96_16195) - 3669462..3670079 (+) 618 WP_081522783.1 phosphatase PAP2 family protein -
  B6R96_RS16200 (B6R96_16200) - 3670103..3671065 (+) 963 WP_081522784.1 A/G-specific adenine glycosylase -
  B6R96_RS16205 (B6R96_16205) - 3671277..3671837 (+) 561 WP_030389735.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49250.43 Da        Isoelectric Point: 8.0042

>NTDB_id=187598 B6R96_RS16180 WP_030389740.1 3665746..3667158(+) (radA/sms) [Streptomyces sp. Sge12]
MAARTARSSAKDRPSYRCTDCGWTTAKWLGRCPECQAWGTVEEMGAPAVRTTAAGRVSTAALPIGQVDGRTATARSTGVD
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRINALSDHLYLAAETDLSA
VLGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGIKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPAGMKVIEVADMGDALRVLPRGRSRTPAKERSAE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=187598 B6R96_RS16180 WP_030389740.1 3665746..3667158(+) (radA/sms) [Streptomyces sp. Sge12]
ATGGCTGCCCGCACCGCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGCTGTACCGACTGCGGCTGGACGACCGCGAA
GTGGCTTGGCCGCTGTCCCGAGTGCCAGGCCTGGGGCACCGTCGAGGAGATGGGCGCGCCCGCCGTGCGGACCACCGCCG
CCGGCCGGGTCTCCACCGCCGCCCTGCCGATCGGCCAGGTCGACGGCCGGACGGCGACCGCCCGCAGCACCGGCGTGGAC
GAGCTGGACCGCGTCCTCGGCGGCGGGCTCGTGCCCGGCGCCGTCGTCCTGCTCGCCGGTGAGCCCGGCGTCGGCAAGTC
GACGCTGCTGCTGGACGTCGCGGCGAAGGCGGCCAGCGACGAGCACCGCACCCTGTACGTGACCGGCGAGGAGTCGGCGA
GCCAGGTGCGGCTGCGGGCCGACCGGATCAACGCTCTCAGCGACCACCTCTACCTGGCCGCCGAGACGGACCTGTCCGCC
GTGCTCGGGCACCTCGACGCCGTGAAGCCCTCCCTGCTGATCCTGGACTCCGTACAGACCGTCGCCTCCCCCGAGATCGA
CGGCGCGCCCGGCGGCATGGCCCAGGTGCGCGAGGTGGCCGGGGCCCTGATCCGGGCCTCCAAGGAACGCGGGATGTCCA
CCCTCCTCGTCGGCCACGTGACCAAGGACGGGGCCATCGCCGGTCCCCGTCTGCTGGAGCACCTCGTCGACGTCGTCCTG
AGCTTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGCGGCATCAAGAACCGGTACGGGGCCACCGACGAGGTCGG
CTGCTTCGAGCTGCACGACGAGGGGATCACCGGCCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGGCGGGCCGAGGCCG
TGCCCGGCACCTGCCTGACCGTGACGCTGGAGGGGAAGCGCCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGACTCG
CAGATCCCCTCCCCGCGGCGCACCACCTCCGGTCTGGAGACCTCGCGCGTCTCGATGATGCTGGCGGTGCTGGAGCAGCG
CGGCCGGATCACGGCGCTCGGCAAGCGCGACATCTACAGCGCCACGGTGGGCGGGGTGAAGCTCACCGAACCGGCCGCCG
ACCTGGCGATCGCGCTCGCGCTGGCCTCCGCCGCCAGTGACGTCCCGCTCCCGAAGAACCTCGTGGCGATCGGTGAGGTC
GGCCTGGCCGGCGAGGTGCGCCGGGTCACCGGCGTGCAGCGGCGGCTCGCGGAGGCGCACCGGCTGGGGTTCACGCACGC
GCTGGTCCCGGCGGATCCGGGCAAGGTGCCGGCCGGGATGAAGGTCATCGAGGTGGCCGACATGGGCGACGCGCTGCGGG
TGTTGCCGCGCGGCCGGTCCCGTACGCCGGCCAAGGAGCGGTCGGCGGAGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-224)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

96.383

0.426
  radA Streptococcus mitis SK321

42.637

96.809

0.413
  radA Streptococcus mitis NCTC 12261

42.637

96.809

0.413
  radA Streptococcus pneumoniae TIGR4

42.699

96.17

0.411
  radA Streptococcus pneumoniae R6

42.699

96.17

0.411
  radA Streptococcus pneumoniae Rx1

42.699

96.17

0.411
  radA Streptococcus pneumoniae D39

42.699

96.17

0.411