Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B6R96_RS07470 Genome accession   NZ_CP020555
Coordinates   1668614..1669243 (+) Length   209 a.a.
NCBI ID   WP_030390325.1    Uniprot ID   -
Organism   Streptomyces sp. Sge12     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1663614..1674243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6R96_RS07450 (B6R96_07455) - 1664535..1665338 (+) 804 WP_030390329.1 IclR family transcriptional regulator -
  B6R96_RS07455 (B6R96_07460) amiE 1665431..1666129 (-) 699 WP_081522030.1 ABC transporter ATP-binding protein Regulator
  B6R96_RS07460 (B6R96_07465) - 1666126..1667211 (-) 1086 WP_081525017.1 ABC transporter permease -
  B6R96_RS07465 (B6R96_07470) - 1667346..1668617 (+) 1272 WP_081522031.1 sensor histidine kinase -
  B6R96_RS07470 (B6R96_07475) vraR 1668614..1669243 (+) 630 WP_030390325.1 response regulator transcription factor Regulator
  B6R96_RS07475 (B6R96_07480) - 1669240..1670727 (-) 1488 WP_081522032.1 PLP-dependent aminotransferase family protein -
  B6R96_RS37195 - 1670816..1671004 (+) 189 WP_159396299.1 hypothetical protein -
  B6R96_RS07480 (B6R96_07485) - 1670965..1671582 (+) 618 WP_081522033.1 nucleotidyltransferase family protein -
  B6R96_RS07485 (B6R96_07490) aceB 1671835..1673454 (+) 1620 WP_081522034.1 malate synthase A -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 21979.32 Da        Isoelectric Point: 5.6743

>NTDB_id=187575 B6R96_RS07470 WP_030390325.1 1668614..1669243(+) (vraR) [Streptomyces sp. Sge12]
MTIRLLLADDHPVVRAGLRAVLDTEPDFAVVAEAATAERAVELAAGEPVDVVLMDLQFGRGMHGSEATALITARPGAPRV
LVLTTYDTDADILAAVEAGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLVADG
LSNQQISKQLFLSQATVKSHLVHVYAKLGVDSRTSAVAAAATRRLIRTP

Nucleotide


Download         Length: 630 bp        

>NTDB_id=187575 B6R96_RS07470 WP_030390325.1 1668614..1669243(+) (vraR) [Streptomyces sp. Sge12]
GTGACCATCCGTCTCCTGCTCGCCGACGACCACCCGGTGGTCCGGGCCGGGCTGCGCGCGGTACTCGACACCGAACCGGA
CTTCGCGGTGGTCGCCGAGGCCGCCACCGCCGAGCGGGCGGTGGAGCTGGCCGCCGGCGAACCGGTGGACGTGGTCCTGA
TGGACCTCCAGTTCGGCCGCGGCATGCACGGCTCCGAGGCGACGGCCCTGATCACCGCCCGCCCGGGCGCTCCCCGGGTG
CTGGTGCTGACCACGTACGACACCGACGCGGACATCCTCGCGGCGGTGGAGGCGGGCGCCTCCGGCTACCTGCTCAAGGA
CGCCCCGCCGGAGGAGCTGGCGGCCGCCGTACGAACGGCCGCGGCGGGCCAGTCGGCGCTGGCCCCGGCGGTGGCGCTGC
GCCTGATGGACCGGATGCGGACCCCGGCGGAGGCGCTGACGAAGCGGGAGCTGGAGGTGTTGCAGCTGGTCGCGGACGGA
CTGTCGAACCAGCAGATCTCCAAGCAGCTGTTCCTCAGCCAGGCCACGGTCAAGTCCCACCTGGTGCACGTCTACGCCAA
ACTCGGCGTCGACTCCCGCACCTCGGCGGTCGCGGCAGCCGCCACCCGCCGCCTGATCCGCACGCCCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)

Bacterial regulatory proteins, luxR family (GerE)

(145-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.095

100

0.383