Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   B6R96_RS07455 Genome accession   NZ_CP020555
Coordinates   1665431..1666129 (-) Length   232 a.a.
NCBI ID   WP_081522030.1    Uniprot ID   -
Organism   Streptomyces sp. Sge12     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1660431..1671129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6R96_RS07435 (B6R96_07440) - 1661151..1661633 (+) 483 WP_107475480.1 GNAT family N-acetyltransferase -
  B6R96_RS07440 (B6R96_07445) alc 1661742..1662860 (-) 1119 WP_081522029.1 allantoicase -
  B6R96_RS07445 (B6R96_07450) allB 1662864..1664207 (-) 1344 WP_030390330.1 allantoinase AllB -
  B6R96_RS07450 (B6R96_07455) - 1664535..1665338 (+) 804 WP_030390329.1 IclR family transcriptional regulator -
  B6R96_RS07455 (B6R96_07460) amiE 1665431..1666129 (-) 699 WP_081522030.1 ABC transporter ATP-binding protein Regulator
  B6R96_RS07460 (B6R96_07465) - 1666126..1667211 (-) 1086 WP_081525017.1 ABC transporter permease -
  B6R96_RS07465 (B6R96_07470) - 1667346..1668617 (+) 1272 WP_081522031.1 sensor histidine kinase -
  B6R96_RS07470 (B6R96_07475) vraR 1668614..1669243 (+) 630 WP_030390325.1 response regulator transcription factor Regulator
  B6R96_RS07475 (B6R96_07480) - 1669240..1670727 (-) 1488 WP_081522032.1 PLP-dependent aminotransferase family protein -
  B6R96_RS37195 - 1670816..1671004 (+) 189 WP_159396299.1 hypothetical protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 24431.06 Da        Isoelectric Point: 8.7556

>NTDB_id=187574 B6R96_RS07455 WP_081522030.1 1665431..1666129(-) (amiE) [Streptomyces sp. Sge12]
MTLLVHDVTLTYPDGESRLTALNAVGLDVPAGTLTAVIGPSGSGKSSLLAVAATLVTPDRGRVVVAGQDTTGLGPAEKSA
LRREKIGIVFQQPNLLASLTAAEQLQVMAHLSGRPARTVRRRALELLAAVGLADKADKRPHQLSGGQRQRINIARALMNE
PAVLLVDEPTSALDHERGAAVLDLLVTLTRERGTATVVVTHDHAHLDRMDRTATMADGRLTLPVTPEPAPTA

Nucleotide


Download         Length: 699 bp        

>NTDB_id=187574 B6R96_RS07455 WP_081522030.1 1665431..1666129(-) (amiE) [Streptomyces sp. Sge12]
ATGACCCTCCTCGTCCACGACGTCACGCTGACCTACCCCGACGGCGAGAGCCGGCTCACCGCCCTGAACGCGGTCGGCCT
GGACGTGCCCGCCGGCACGCTGACCGCGGTCATAGGCCCCTCCGGCTCCGGCAAGTCCAGCCTGCTGGCGGTCGCCGCCA
CCCTCGTCACCCCGGACCGCGGCCGGGTCGTCGTCGCCGGCCAGGACACCACGGGGCTCGGCCCCGCCGAGAAGTCGGCC
CTGCGCCGGGAGAAGATCGGCATCGTCTTCCAGCAGCCGAACCTGCTGGCCTCGCTGACCGCCGCCGAACAGCTCCAGGT
CATGGCGCACCTCTCCGGCCGCCCGGCGCGTACCGTGCGCCGCCGCGCGCTGGAGCTGCTGGCGGCGGTGGGCCTGGCCG
ACAAGGCCGACAAGCGGCCCCACCAGCTCTCCGGCGGTCAGCGGCAGCGGATCAACATCGCCCGCGCCCTGATGAACGAG
CCCGCCGTCCTGCTGGTCGACGAGCCGACCAGCGCCCTGGACCACGAGCGCGGCGCGGCCGTCCTCGACCTGCTGGTCAC
CCTGACCCGGGAGCGCGGCACCGCCACGGTGGTGGTCACGCACGACCACGCCCACCTGGATCGGATGGACCGTACGGCGA
CGATGGCGGACGGCAGGCTCACCCTCCCCGTCACCCCGGAGCCGGCCCCGACGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

35.443

100

0.362