Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B6R96_RS04820 Genome accession   NZ_CP020555
Coordinates   1032029..1032688 (+) Length   219 a.a.
NCBI ID   WP_081521710.1    Uniprot ID   -
Organism   Streptomyces sp. Sge12     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1027029..1037688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6R96_RS04795 (B6R96_04800) - 1027785..1028105 (-) 321 WP_079406923.1 transcriptional regulator -
  B6R96_RS04800 (B6R96_04805) - 1028102..1028593 (-) 492 WP_081521706.1 hypothetical protein -
  B6R96_RS04805 (B6R96_04810) - 1028817..1029596 (-) 780 WP_107475674.1 ABC transporter permease -
  B6R96_RS04810 (B6R96_04815) - 1029731..1030642 (-) 912 WP_081521708.1 ABC transporter ATP-binding protein -
  B6R96_RS04815 (B6R96_04820) - 1030776..1032032 (+) 1257 WP_203351590.1 histidine kinase -
  B6R96_RS04820 (B6R96_04825) vraR 1032029..1032688 (+) 660 WP_081521710.1 response regulator transcription factor Regulator
  B6R96_RS04825 (B6R96_04830) - 1033035..1034252 (-) 1218 WP_081521711.1 MAB_1171c family putative transporter -
  B6R96_RS04830 (B6R96_04835) - 1034262..1034780 (-) 519 WP_081521712.1 ImmA/IrrE family metallo-endopeptidase -
  B6R96_RS04835 (B6R96_04840) - 1034777..1035298 (-) 522 WP_237291322.1 helix-turn-helix domain-containing protein -
  B6R96_RS04840 (B6R96_04845) - 1035681..1036670 (+) 990 WP_159396282.1 hypothetical protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23361.06 Da        Isoelectric Point: 4.6095

>NTDB_id=187570 B6R96_RS04820 WP_081521710.1 1032029..1032688(+) (vraR) [Streptomyces sp. Sge12]
MTIRVVLTDDQPLVRAALQMVITDTPDIEVVGEAGDGAEAVRLTEELAPDVVVMDLRMPGMDGIEATRLITQSTGSARVV
VLTTFDDDEYVYGALHAGASGFLVKDMALDDILSAIRIVAAGDALIAPAVTRRLIKDFIARPAASPPRQAKLDGITARER
EVLTLVGKGLSNTEIAGELCISIATAKTYLTRLLAKLDARDRVQLVILAYEAGLVAAHR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=187570 B6R96_RS04820 WP_081521710.1 1032029..1032688(+) (vraR) [Streptomyces sp. Sge12]
ATGACCATCCGTGTCGTACTCACCGACGACCAGCCCCTGGTCCGCGCCGCACTGCAGATGGTCATCACGGACACCCCGGA
CATCGAGGTGGTGGGCGAGGCCGGAGACGGCGCGGAAGCAGTACGGCTGACGGAGGAACTCGCCCCCGACGTCGTCGTGA
TGGACCTCCGGATGCCCGGTATGGACGGCATCGAAGCCACCCGGCTGATCACGCAGAGCACCGGATCCGCACGCGTCGTC
GTCCTCACGACCTTCGACGACGACGAGTACGTCTACGGGGCGCTGCACGCCGGCGCATCCGGATTCCTCGTCAAGGACAT
GGCCCTGGACGACATCCTCTCCGCGATCCGGATCGTTGCCGCCGGGGACGCCCTGATCGCCCCGGCCGTCACACGCCGGC
TGATCAAGGACTTCATCGCCCGACCCGCAGCGTCACCGCCGCGGCAGGCGAAGCTCGATGGCATCACCGCCCGAGAACGC
GAGGTGCTGACCCTCGTCGGCAAGGGCCTGTCCAATACGGAGATCGCCGGCGAGCTCTGCATCAGCATCGCCACCGCCAA
GACCTACCTGACCCGCCTGCTCGCCAAACTCGATGCCCGCGACCGGGTACAGCTGGTGATCCTGGCCTACGAGGCAGGCC
TGGTGGCAGCGCACCGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.963

98.63

0.374
  degU Bacillus subtilis subsp. subtilis str. 168

35.874

100

0.365