Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B6R96_RS02210 Genome accession   NZ_CP020555
Coordinates   476060..476740 (+) Length   226 a.a.
NCBI ID   WP_030384870.1    Uniprot ID   A0ABQ3T4E8
Organism   Streptomyces sp. Sge12     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 471060..481740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6R96_RS38620 - 471337..472737 (+) 1401 WP_261341243.1 serine protease -
  B6R96_RS02190 (B6R96_02195) - 472688..473083 (-) 396 WP_107475444.1 hypothetical protein -
  B6R96_RS02195 (B6R96_02200) - 473136..473708 (-) 573 WP_053175878.1 HXXEE domain-containing protein -
  B6R96_RS02200 (B6R96_02205) - 473705..474667 (-) 963 WP_237291629.1 AEC family transporter -
  B6R96_RS02205 (B6R96_02210) - 474783..476063 (+) 1281 WP_237291630.1 histidine kinase -
  B6R96_RS02210 (B6R96_02215) vraR 476060..476740 (+) 681 WP_030384870.1 response regulator transcription factor Regulator
  B6R96_RS02215 (B6R96_02220) - 476934..478001 (+) 1068 WP_081521355.1 alpha/beta hydrolase -
  B6R96_RS02220 (B6R96_02225) - 477998..479230 (+) 1233 WP_030384868.1 acyltransferase -
  B6R96_RS02225 (B6R96_02230) - 479310..479732 (-) 423 WP_030384867.1 DUF350 domain-containing protein -
  B6R96_RS02230 (B6R96_02235) - 479828..481696 (+) 1869 WP_081521356.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24334.17 Da        Isoelectric Point: 5.7044

>NTDB_id=187567 B6R96_RS02210 WP_030384870.1 476060..476740(+) (vraR) [Streptomyces sp. Sge12]
MTIRVIIVDDQAMVRAGFAALLSAQADIDVVGEAPDGRQGVQVSRSTHPDVVLMDVRMPEMDGLTAAREILDPPPGVVHR
PKVLMLTTFDIDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGEALLAPSVTRRLIADFVQQRPAPRKDPALRLKGL
TPRETEVLELIARGLSNQEIAGHLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYEAGLVRPGDSG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=187567 B6R96_RS02210 WP_030384870.1 476060..476740(+) (vraR) [Streptomyces sp. Sge12]
TTGACCATCCGCGTGATCATCGTCGACGACCAGGCCATGGTGCGGGCCGGGTTCGCCGCGCTGCTGTCGGCGCAGGCCGA
CATCGATGTGGTGGGCGAGGCCCCCGACGGGCGCCAAGGGGTGCAGGTGTCCCGCTCCACGCACCCCGACGTGGTGCTGA
TGGACGTGCGGATGCCGGAGATGGACGGGCTGACGGCCGCCCGCGAGATCCTCGATCCCCCGCCCGGGGTGGTGCACCGG
CCGAAGGTGCTGATGCTGACCACCTTCGACATCGACGACTACGTGTACGAGGCGCTGCGCGCGGGGGCCTCCGGTTTCCT
CCTCAAGGACGCCCCGCCGGCCGATCTGATCGCGGCGGTCCGGGTCGTCGCCTCGGGTGAGGCCCTGCTGGCGCCCTCGG
TGACGCGGCGGCTGATCGCGGACTTCGTCCAGCAGCGGCCGGCGCCGCGCAAGGATCCCGCGCTGCGGCTGAAGGGGCTC
ACGCCGCGCGAGACCGAGGTGCTGGAGCTCATCGCGCGCGGCCTGTCGAACCAGGAGATTGCGGGCCACCTGGTGCTGGC
GGAGCAGACGGTGAAGACGCACATCGGCCGGGTGCTGGCCAAGCTCGACCTGCGGGACCGGGCCCAGGCGGTGATCTTCG
CGTACGAGGCGGGGCTGGTGCGGCCGGGCGACTCCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.081

97.788

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

37.004

100

0.372