Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   B6N50_RS06015 Genome accession   NZ_CP020543
Coordinates   1176562..1177299 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli C     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1171562..1182299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6N50_RS05985 (B6N50_05985) yfiL 1171720..1172085 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  B6N50_RS05990 (B6N50_05990) aroF 1172295..1173365 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  B6N50_RS05995 (B6N50_05995) tyrA 1173376..1174497 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  B6N50_RS06000 (B6N50_06000) pheA 1174540..1175700 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  B6N50_RS23585 pheL 1175799..1175846 (-) 48 WP_010723158.1 phe operon leader peptide -
  B6N50_RS06005 (B6N50_06005) raiA 1175950..1176291 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  B6N50_RS06015 (B6N50_06015) comL 1176562..1177299 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  B6N50_RS06020 (B6N50_06020) rluD 1177434..1178414 (+) 981 WP_081508788.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  B6N50_RS06025 (B6N50_06025) yfiH 1178411..1179142 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  B6N50_RS06030 (B6N50_06030) clpC 1179272..1181845 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=187419 B6N50_RS06015 WP_000197686.1 1176562..1177299(-) (comL) [Escherichia coli C]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=187419 B6N50_RS06015 WP_000197686.1 1176562..1177299(-) (comL) [Escherichia coli C]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment