Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BBD24_RS00060 Genome accession   NZ_CP016355
Coordinates   11614..12210 (+) Length   198 a.a.
NCBI ID   WP_003568462.1    Uniprot ID   A0A0C9PXZ6
Organism   Lacticaseibacillus paracasei subsp. paracasei strain TMW 1.1434     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1523..14010 11614..12210 within 0


Gene organization within MGE regions


Location: 1523..14010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBD24_RS00010 (BBD24_00010) dnaN 1523..2662 (+) 1140 WP_049176622.1 DNA polymerase III subunit beta -
  BBD24_RS00020 (BBD24_00020) yaaA 3515..3727 (+) 213 WP_003568449.1 S4 domain-containing protein YaaA -
  BBD24_RS00025 (BBD24_00025) recF 3724..4839 (+) 1116 WP_003603996.1 DNA replication/repair protein RecF -
  BBD24_RS00035 (BBD24_00030) gyrB 5092..7053 (+) 1962 WP_003568453.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BBD24_RS00040 (BBD24_00035) gyrA 7115..9736 (+) 2622 WP_003603997.1 DNA gyrase subunit A -
  BBD24_RS00045 (BBD24_00040) deoC 9841..10545 (-) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  BBD24_RS00050 (BBD24_00045) ssb 10728..11159 (+) 432 WP_003568458.1 single-stranded DNA-binding protein -
  BBD24_RS00055 (BBD24_00050) rpsF 11287..11583 (+) 297 WP_003568460.1 30S ribosomal protein S6 -
  BBD24_RS00060 (BBD24_00055) ssb 11614..12210 (+) 597 WP_003568462.1 single-stranded DNA-binding protein Machinery gene
  BBD24_RS00065 (BBD24_00060) rpsR 12297..12533 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  BBD24_RS16345 - 12975..13100 (+) 126 WP_225367318.1 cytochrome ubiquinol oxidase subunit I -
  BBD24_RS00070 (BBD24_00065) - 13090..14010 (-) 921 WP_003574021.1 IS30 family transposase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21138.87 Da        Isoelectric Point: 4.9056

>NTDB_id=187290 BBD24_RS00060 WP_003568462.1 11614..12210(+) (ssb) [Lacticaseibacillus paracasei subsp. paracasei strain TMW 1.1434]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=187290 BBD24_RS00060 WP_003568462.1 11614..12210(+) (ssb) [Lacticaseibacillus paracasei subsp. paracasei strain TMW 1.1434]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCTATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTACGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485

Multiple sequence alignment