Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   BA894_RS12640 Genome accession   NZ_CP016351
Coordinates   2817601..2818215 (+) Length   204 a.a.
NCBI ID   WP_020333941.1    Uniprot ID   A0AAN0Y4A1
Organism   Vibrio natriegens strain CCUG 16374     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2812601..2823215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA894_RS12620 (BA894_12620) - 2812829..2813740 (-) 912 WP_065297696.1 ABC transporter ATP-binding protein -
  BA894_RS12625 (BA894_12625) - 2814046..2815716 (-) 1671 WP_065297697.1 SulP family inorganic anion transporter -
  BA894_RS12630 (BA894_12630) can 2815996..2816664 (+) 669 WP_014232941.1 carbonate dehydratase -
  BA894_RS12635 (BA894_12635) hpt 2816753..2817283 (-) 531 WP_014232942.1 hypoxanthine phosphoribosyltransferase -
  BA894_RS12640 (BA894_12640) opaR 2817601..2818215 (+) 615 WP_020333941.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  BA894_RS12645 (BA894_12645) lpdA 2818341..2819768 (-) 1428 WP_014232944.1 dihydrolipoyl dehydrogenase -
  BA894_RS12650 (BA894_12650) aceF 2820035..2821924 (-) 1890 WP_065297359.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23655.95 Da        Isoelectric Point: 6.3780

>NTDB_id=187257 BA894_RS12640 WP_020333941.1 2817601..2818215(+) (opaR) [Vibrio natriegens strain CCUG 16374]
MDSIAKRARTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARDNIANITSAMIELVNQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEICNTHQPE
HLTNLFHGICYSLFVQANRFKGEDELKNLVSSYLDMLCIYDRNQ

Nucleotide


Download         Length: 615 bp        

>NTDB_id=187257 BA894_RS12640 WP_020333941.1 2817601..2818215(+) (opaR) [Vibrio natriegens strain CCUG 16374]
ATGGACTCAATTGCAAAGAGAGCCCGTACTAGGCTTTCCCCTATTAAGCGTAAACAACAATTGATGGAAATCGCGTTGGA
AGTATTTGCGCGTCGCGGCATTGGCCGTGGTGGTCATGCGGATATCGCTGAAATCGCGCAGGTTTCTGTTGCTACCGTTT
TTAACTACTTCCCAACTCGCGAAGATCTCGTTGATGAAGTGCTGAACCACGTAGTACGTCAGTTCTCGAACTTCCTTTCA
GATAATATCGATCTAGACCTACACGCTCGTGACAATATTGCGAATATCACCAGCGCAATGATTGAGTTGGTTAATCAAGA
TTGCCACTGGCTGAAAGTATGGTTTGAGTGGAGCGCATCGACACGCGACGAAGTTTGGCCACTATTCGTGTCAACCAACC
GCACCAACCAGCTGTTGGTACAGAACATGTTTATCAAAGCAATTGAGCGTGGTGAAATCTGTAACACGCATCAACCAGAA
CATTTGACTAACTTGTTCCACGGCATTTGCTACTCACTGTTTGTACAAGCAAACCGTTTTAAGGGTGAAGATGAGCTGAA
AAACCTCGTAAGTTCATACCTTGATATGCTTTGTATCTACGATCGCAATCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

92.079

99.02

0.912
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696

Multiple sequence alignment