Detailed information NTG0187218

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BA893_RS13240
• Genome accession: NZ_CP016349
• Coordinates: 2924433..2925419 (-)
• Length: 328 a.a.
• NCBI ID: WP_024372915.1
• Uniprot ID: -
• Organism: Vibrio natriegens strain CCUG 16373
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2919433..2930419

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BA893_RS13225 (BA893_13225)	recA	2919979..2921025 (-)	1047	WP_014232974.1	recombinase RecA	Machinery gene
BA893_RS13230 (BA893_13230)	pncC	2921216..2921707 (-)	492	WP_065300197.1	nicotinamide-nucleotide amidase	-
BA893_RS13235 (BA893_13235)	mutS	2921792..2924358 (+)	2567	Protein_2582	DNA mismatch repair protein MutS	-
BA893_RS13240 (BA893_13240)	rpoS	2924433..2925419 (-)	987	WP_024372915.1	RNA polymerase sigma factor RpoS	Regulator
BA893_RS13245 (BA893_13245)	-	2925500..2926423 (-)	924	WP_024372916.1	peptidoglycan DD-metalloendopeptidase family protein	-
BA893_RS13250 (BA893_13250)	-	2926437..2927063 (-)	627	WP_014232979.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BA893_RS13255 (BA893_13255)	surE	2927063..2927809 (-)	747	WP_024372917.1	5'/3'-nucleotidase SurE	-
BA893_RS13260 (BA893_13260)	truD	2927839..2928882 (-)	1044	WP_065300198.1	tRNA pseudouridine(13) synthase TruD	-
BA893_RS13265 (BA893_13265)	ispF	2928925..2929404 (-)	480	WP_014232982.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BA893_RS13270 (BA893_13270)	ispD	2929418..2930125 (-)	708	WP_065300199.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BA893_RS13275 (BA893_13275)	ftsB	2930127..2930408 (-)	282	WP_014232984.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37315.19 Da
• Isoelectric Point: 4.7268

>NTDB_id=187218 BA893_RS13240 WP_024372915.1 2924433..2925419(-) (rpoS) [Vibrio natriegens strain CCUG 16373]
MSISNTVTKVEEFDFDDESVKTVASQLGKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDGNNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=187218 BA893_RS13240 WP_024372915.1 2924433..2925419(-) (rpoS) [Vibrio natriegens strain CCUG 16373]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGATTTTGACGATGAGTCAGTGAAGACCGTTGCGAGTCAACT
CGGAAAATCATCATCCACAGAAAGCAAAACTGCTGCGCGTGAAGAATTCGATGCAAGCAGCAAGAGCTTAGATGCCACCC
AATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTCACTGCTGAAGAAGAAGTGCTTTATGCTCGACGCGCATTACGT
GGCGACGAAGCTGCTCGTAAGCGCATGATCGAAAGTAACTTACGCTTAGTTGTAAAGATCTCTCGTCGTTACAGCAACCG
CGGCTTAGCCCTTCTGGACCTTATTGAAGAAGGAAACCTTGGCTTGATCCGTGCAGTTGAGAAATTCGACCCGGAACGCG
GTTTCCGTTTCTCTACCTATGCAACATGGTGGATTCGACAAACGATCGAACGAGCGTTGATGAACCAAACTCGTACTATT
CGTCTACCGATTCACGTTGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCATGA
ACCAACAGCCGAAGAGATTGCAGCGCAACTTGATATTCCTGTTGAAGATGTCAGCAAAATGCTTCGCTTGAATGAGCGTA
TTAGTTCTGTCGACACGCCAATTGGTGGTGATGGAGAAAAAGCACTACTTGATATCATTCCAGATGGTAACAATTCTGAC
CCTGAAGTTTCGACACAAGATGACGACATCAAGTCTTCTCTAATCCATTGGCTTGAAGAGCTAAACCCGAAACAGAAAGA
AGTGCTGGCTCGTCGTTTTGGTTTATTAGGTTATGAACCTTCAACGCTGGAAGAAGTAGGGCGTGAAATTGGACTTACTC
GTGAACGCGTGCGCCAGATCCAAGTGGAAGGTTTACGTCGTCTACGCGAAGTATTGATTAAACAAGGCCTGAATATGGAG
AACTTGTTTAACGTCGAAGATGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.132	100	0.857