Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   BA893_RS13010 Genome accession   NZ_CP016349
Coordinates   2879713..2880327 (+) Length   204 a.a.
NCBI ID   WP_065300180.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16373     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2874713..2885327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA893_RS12990 (BA893_12990) - 2874940..2875851 (-) 912 WP_014232939.1 ABC transporter ATP-binding protein -
  BA893_RS12995 (BA893_12995) - 2876159..2877829 (-) 1671 WP_014232940.1 SulP family inorganic anion transporter -
  BA893_RS13000 (BA893_13000) can 2878109..2878777 (+) 669 WP_014232941.1 carbonate dehydratase -
  BA893_RS13005 (BA893_13005) hpt 2878866..2879396 (-) 531 WP_014232942.1 hypoxanthine phosphoribosyltransferase -
  BA893_RS13010 (BA893_13010) opaR 2879713..2880327 (+) 615 WP_065300180.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  BA893_RS13015 (BA893_13015) lpdA 2880451..2881878 (-) 1428 WP_014232944.1 dihydrolipoyl dehydrogenase -
  BA893_RS13020 (BA893_13020) aceF 2882145..2884034 (-) 1890 WP_065300181.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23583.89 Da        Isoelectric Point: 6.6000

>NTDB_id=187211 BA893_RS13010 WP_065300180.1 2879713..2880327(+) (opaR) [Vibrio natriegens strain CCUG 16373]
MDSIAKRARTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARDNIANITSAMIELVNQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEICNTHQPE
HLTNLFHGICYSLFVQANRFKGEDGLKNLVSSYLDMLCIYDRNQ

Nucleotide


Download         Length: 615 bp        

>NTDB_id=187211 BA893_RS13010 WP_065300180.1 2879713..2880327(+) (opaR) [Vibrio natriegens strain CCUG 16373]
ATGGACTCAATTGCAAAGAGAGCCCGTACTAGGCTTTCCCCTATTAAGCGTAAACAACAACTCATGGAAATCGCGTTGGA
AGTATTTGCGCGTCGCGGTATTGGTCGTGGTGGTCATGCGGATATCGCTGAAATCGCGCAGGTTTCTGTTGCTACCGTTT
TTAACTACTTCCCAACTCGCGAAGATCTCGTTGATGAAGTGCTGAACCACGTAGTACGTCAGTTCTCGAACTTCCTTTCA
GATAACATCGATTTAGACCTACACGCTCGTGACAATATTGCGAATATCACCAGCGCAATGATTGAGCTAGTCAATCAAGA
TTGCCACTGGCTGAAAGTATGGTTTGAGTGGAGCGCATCGACACGCGACGAAGTTTGGCCACTATTCGTGTCAACCAACC
GCACCAACCAGCTGTTGGTACAGAACATGTTTATCAAAGCAATTGAGCGTGGTGAAATCTGTAACACGCATCAACCAGAA
CATTTGACTAACTTGTTCCACGGCATTTGCTACTCACTGTTTGTACAAGCAAACCGTTTTAAGGGTGAAGATGGGCTGAA
AAACCTCGTAAGTTCATACCTTGATATGCTTTGTATTTACGATCGCAATCAGTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

91.584

99.02

0.907
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696

Multiple sequence alignment