Detailed information NTG0187173

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BA891_RS12365
• Genome accession: NZ_CP016347
• Coordinates: 2741475..2742404 (-)
• Length: 309 a.a.
• NCBI ID: WP_237333467.1
• Uniprot ID: -
• Organism: Vibrio natriegens strain CCUG 16371
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2736475..2747404

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BA891_RS12350 (BA891_12350)	recA	2737026..2738072 (-)	1047	WP_014232974.1	recombinase RecA	Machinery gene
BA891_RS12355 (BA891_12355)	pncC	2738263..2738754 (-)	492	WP_065302876.1	nicotinamide-nucleotide amidase	-
BA891_RS12360 (BA891_12360)	mutS	2738839..2741400 (+)	2562	WP_065302877.1	DNA mismatch repair protein MutS	-
BA891_RS12365 (BA891_12365)	rpoS	2741475..2742404 (-)	930	WP_237333467.1	RNA polymerase sigma factor RpoS	Regulator
BA891_RS12370 (BA891_12370)	-	2742542..2743465 (-)	924	WP_024372916.1	peptidoglycan DD-metalloendopeptidase family protein	-
BA891_RS12375 (BA891_12375)	-	2743479..2744105 (-)	627	WP_014232979.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BA891_RS12380 (BA891_12380)	surE	2744105..2744851 (-)	747	WP_024372917.1	5'/3'-nucleotidase SurE	-
BA891_RS12385 (BA891_12385)	truD	2744881..2745924 (-)	1044	WP_065302878.1	tRNA pseudouridine(13) synthase TruD	-
BA891_RS12390 (BA891_12390)	ispF	2745967..2746446 (-)	480	WP_014232982.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BA891_RS12395 (BA891_12395)	ispD	2746460..2747167 (-)	708	WP_014232983.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 309 a.a.
• Molecular weight: 35172.89 Da
• Isoelectric Point: 5.0165

>NTDB_id=187173 BA891_RS12365 WP_237333467.1 2741475..2742404(-) (rpoS) [Vibrio natriegens strain CCUG 16371]
MKTVASQLGKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVK
ISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARE
LSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDGNNSDPEVSTQDDDIKSSLIHWLE
ELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQNQVEGLRRLREVLIKQGLNMENLFNVEDD

Nucleotide

• Length: 930 bp

>NTDB_id=187173 BA891_RS12365 WP_237333467.1 2741475..2742404(-) (rpoS) [Vibrio natriegens strain CCUG 16371]
GTGAAGACCGTTGCGAGTCAACTCGGAAAATCATCATCCACAGAAAGCAAAACTGCTGCGCGTGAAGAATTCGATGCAAG
CAGCAAGAGCTTAGATGCCACCCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTCACTGCTGAAGAAGAAGTGC
TTTATGCTCGACGCGCATTACGTGGCGACGAAGCTGCTCGTAAGCGCATGATCGAAAGTAACTTACGCTTAGTTGTAAAG
ATCTCTCGTCGTTACAGCAACCGCGGCTTGGCCCTTCTGGACCTTATTGAAGAAGGTAACCTTGGCTTGATCCGTGCAGT
TGAGAAATTCGACCCAGAACGCGGTTTCCGTTTCTCTACCTATGCAACATGGTGGATTCGACAAACGATCGAACGTGCGT
TGATGAACCAAACGCGTACCATTCGTTTACCGATTCACGTTGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAA
CTTTCTCAGAAGCTCGATCATGAACCAACAGCTGAAGAGATTGCAGCGCAACTTGATATTCCTGTTGAAGATGTCAGCAA
AATGCTTCGCTTGAATGAGCGTATTAGTTCTGTCGACACGCCAATTGGTGGTGATGGTGAAAAAGCACTACTTGATATCA
TTCCAGATGGTAACAATTCTGACCCTGAAGTTTCGACACAAGATGACGACATCAAGTCTTCTCTAATCCATTGGCTTGAA
GAGTTGAACCCGAAACAGAAAGAAGTGTTGGCTCGTCGTTTTGGTTTATTAGGTTATGAACCTTCAACGCTGGAAGAAGT
AGGGCGTGAAATTGGACTCACTCGTGAACGCGTTCGCCAGAACCAAGTGGAAGGTTTACGTCGTCTACGCGAAGTATTGA
TTAAACAAGGCCTGAATATGGAGAACTTGTTTAACGTCGAAGATGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (238-291)

• Sigma-70 region 3 (Sigma70_r3) (150-223)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (32-65)

• Sigma-70 region 2 (Sigma70_r2) (70-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	90.345	93.851	0.848