Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   BA891_RS12130 Genome accession   NZ_CP016347
Coordinates   2696959..2697573 (+) Length   204 a.a.
NCBI ID   WP_020333941.1    Uniprot ID   A0AAN0Y4A1
Organism   Vibrio natriegens strain CCUG 16371     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2691959..2702573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA891_RS12110 (BA891_12110) - 2692185..2693096 (-) 912 WP_014232939.1 ABC transporter ATP-binding protein -
  BA891_RS12115 (BA891_12115) - 2693404..2695074 (-) 1671 WP_014232940.1 SulP family inorganic anion transporter -
  BA891_RS12120 (BA891_12120) can 2695354..2696022 (+) 669 WP_014232941.1 carbonate dehydratase -
  BA891_RS12125 (BA891_12125) hpt 2696111..2696641 (-) 531 WP_014232942.1 hypoxanthine phosphoribosyltransferase -
  BA891_RS12130 (BA891_12130) opaR 2696959..2697573 (+) 615 WP_020333941.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  BA891_RS12135 (BA891_12135) lpdA 2697698..2699125 (-) 1428 WP_014232944.1 dihydrolipoyl dehydrogenase -
  BA891_RS12140 (BA891_12140) aceF 2699392..2701266 (-) 1875 WP_065302860.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23655.95 Da        Isoelectric Point: 6.3780

>NTDB_id=187165 BA891_RS12130 WP_020333941.1 2696959..2697573(+) (opaR) [Vibrio natriegens strain CCUG 16371]
MDSIAKRARTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARDNIANITSAMIELVNQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEICNTHQPE
HLTNLFHGICYSLFVQANRFKGEDELKNLVSSYLDMLCIYDRNQ

Nucleotide


Download         Length: 615 bp        

>NTDB_id=187165 BA891_RS12130 WP_020333941.1 2696959..2697573(+) (opaR) [Vibrio natriegens strain CCUG 16371]
ATGGACTCAATTGCAAAGAGAGCCCGTACTAGGCTTTCCCCTATTAAGCGTAAACAACAATTGATGGAAATCGCGTTGGA
AGTATTTGCGCGTCGCGGCATTGGCCGTGGTGGTCATGCGGATATCGCTGAAATCGCGCAGGTTTCTGTTGCTACCGTTT
TTAACTACTTCCCAACTCGCGAAGATCTCGTTGATGAAGTGCTGAACCACGTAGTACGTCAGTTCTCGAACTTCCTTTCA
GATAATATCGATCTAGACCTACACGCTCGTGACAATATTGCGAATATCACCAGCGCAATGATTGAGTTGGTTAATCAAGA
TTGCCACTGGCTGAAAGTATGGTTTGAGTGGAGCGCATCGACACGCGACGAAGTTTGGCCACTATTCGTGTCAACCAACC
GCACCAACCAGCTGTTGGTACAGAACATGTTTATCAAAGCAATTGAGCGTGGTGAAATCTGTAACACGCATCAACCAGAA
CATTTGACTAACTTGTTCCACGGCATTTGCTACTCACTGTTTGTACAAGCAAACCGTTTTAAGGGTGAAGATGAGCTGAA
AAACCTCGTAAGTTCATACCTTGATATGCTTTGTATTTACGATCGCAATCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

92.079

99.02

0.912
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696

Multiple sequence alignment