Detailed information NTG0187104

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: BA890_RS01310
• Genome accession: NZ_CP016345
• Coordinates: 283884..284891 (-)
• Length: 335 a.a.
• NCBI ID: WP_014230660.1
• Uniprot ID: -
• Organism: Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 278884..289891

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BA890_RS01280 (BA890_01280)	zapB	279008..279250 (+)	243	WP_014230654.1	cell division protein ZapB	-
BA890_RS01285 (BA890_01285)	rraA	279324..279866 (-)	543	WP_014230655.1	ribonuclease E activity regulator RraA	-
BA890_RS01290 (BA890_01290)	-	279943..280860 (-)	918	WP_020335798.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
BA890_RS01295 (BA890_01295)	hslU	281116..282447 (-)	1332	WP_014230657.1	HslU--HslV peptidase ATPase subunit	-
BA890_RS01300 (BA890_01300)	hslV	282471..283022 (-)	552	WP_020335799.1	ATP-dependent protease subunit HslV	-
BA890_RS01305 (BA890_01305)	-	283177..283722 (-)	546	WP_014230659.1	SPOR domain-containing protein	-
BA890_RS01310 (BA890_01310)	cytR	283884..284891 (-)	1008	WP_014230660.1	DNA-binding transcriptional regulator CytR	Regulator
BA890_RS01315 (BA890_01315)	priA	285227..287431 (-)	2205	WP_020335801.1	primosomal protein N'	-
BA890_RS01320 (BA890_01320)	rpmE	287729..287950 (+)	222	WP_014230662.1	50S ribosomal protein L31	-
BA890_RS01325 (BA890_01325)	rpsJ	288409..288720 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
BA890_RS01330 (BA890_01330)	rplC	288735..289364 (+)	630	WP_014230663.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36842.30 Da
• Isoelectric Point: 6.2447

>NTDB_id=187104 BA890_RS01310 WP_014230660.1 283884..284891(-) (cytR) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGINKDPQYSIVTEFSFDGGAKAVRKLLELAEPPTA
IFCHCDTMAIGAIQEAKKLGFRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TNLIVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=187104 BA890_RS01310 WP_014230660.1 283884..284891(-) (cytR) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTATCTACCGCGACGGTATCTCGAGCATTAATGAATCCGGAGAA
AGTCTCCTCTTCAACCAGAAAAAGAGTTGAAGACGCGGTACTCGAAGCAGGTTACTCACCAAATTCATTAGCGCGTAATT
TACGACGAAACGAATCGAAAACCATTGTTACGATCGTTCCTGACATCTGCGACCCTTACTTTTCCGAAATCATCCGTGGT
ATCGAAGATGCGGCCATGGAGCACGGCTACCTGGTTTTGCTGGGAGACAGTGGCCAGCAGAAGAAACGCGAAAGCTCATT
CGTAAACCTGGTATTTACAAAGCAAGCAGACGGGATGCTGCTACTTGGTACTGACTTACCGTTTGATGTTAGTAAGCCAG
AGCAGAAAAACCTGCCACCAATGGTCATGGCGTGTGAATTTGCGCCTGAGCTCGAACTGCCAACCGTTCATATCGATAAC
CTGACTTCTGCCTTTGAAGCGGTCAATTATCTGACTCAGCTTGGCCACAAACGTATTGCGCAAATTTCAGGTCCTGATAC
CGCGGTATTGTGCCAATTCCGTCAACAAGGTTACCAGCAAGCACTGCGTCGTGCAGGGATCAATAAAGACCCGCAATACA
GTATTGTCACCGAGTTCTCTTTTGACGGCGGAGCAAAAGCAGTGCGTAAGCTGCTGGAACTAGCGGAACCACCAACCGCG
ATTTTCTGCCACTGTGACACGATGGCAATCGGCGCCATTCAAGAAGCGAAAAAACTCGGCTTCCGTGTACCACAAGATCT
ATCGGTTGTAGGTTTTGATGACATCAATTTCGCGCAGTACTGTGATCCACCGTTAACGACGATCTCTCAGCCTCGTTACG
AGATTGGCCGACAAGCGATGCTAATGATGTTAGAGCTTTTAAAAGGCCACGATGTGCATTCTGGATCTCGTCTTCTGGAG
ACTAACCTGATTGTGCGCGGAAGTGCTGCGCCTCCTCAACGAGCGTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	97.612	100	0.976
cytR	Vibrio cholerae C6706	89.222	99.701	0.89